Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
LIMD1Q9UGP4 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 AC027307.2-201ENST00000591252 911 ntBASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 AL139327.4-201ENST00000612362 153 ntBASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 AC009118.2-201ENST00000613275 655 ntBASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 MIR6752-201ENST00000618442 71 ntBASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 WASH6P-202ENST00000359512 1437 ntBASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
LIMD1Q9UGP4 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 KRT18P55-202ENST00000578578 1546 ntBASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 AC004233.3-201ENST00000607794 1269 ntBASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 AL590560.3-201ENST00000623350 461 ntBASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 AC008267.7-201ENST00000624570 1194 ntBASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
LIMD1Q9UGP4 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIMD1Q9UGP4 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIMD1Q9UGP4 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIMD1Q9UGP4 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
LIMD1Q9UGP4 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.52■□□□□ 0.39
LIMD1Q9UGP4 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.52■□□□□ 0.39
LIMD1Q9UGP4 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 COX5BP8-201ENST00000416911 349 ntBASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC17.51■□□□□ 0.39
LIMD1Q9UGP4 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms