Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 AC006538.1-201ENST00000567905 1585 ntBASIC16.9■□□□□ 0.3
LHX3Q9UBR4 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 ACTG1P14-201ENST00000446382 1122 ntBASIC16.9■□□□□ 0.3
LHX3Q9UBR4 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 HLA-J-202ENST00000469281 1241 ntBASIC16.9■□□□□ 0.3
LHX3Q9UBR4 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 HLA-A-202ENST00000376806 1854 ntBASIC16.9■□□□□ 0.3
LHX3Q9UBR4 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.9■□□□□ 0.3
LHX3Q9UBR4 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
LHX3Q9UBR4 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
LHX3Q9UBR4 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
LHX3Q9UBR4 AC020916.1-201ENST00000587762 1774 ntBASIC16.89■□□□□ 0.3
LHX3Q9UBR4 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
LHX3Q9UBR4 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 AC134684.3-201ENST00000641758 218 ntBASIC16.89■□□□□ 0.29
LHX3Q9UBR4 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
LHX3Q9UBR4 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 PCDHA12-202ENST00000613593 2588 ntBASIC16.88■□□□□ 0.29
LHX3Q9UBR4 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 AGGF1P2-201ENST00000426656 2106 ntBASIC16.88■□□□□ 0.29
LHX3Q9UBR4 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 AC016027.1-202ENST00000607927 1699 ntBASIC16.88■□□□□ 0.29
LHX3Q9UBR4 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 AC004967.1-201ENST00000453589 447 ntBASIC16.88■□□□□ 0.29
LHX3Q9UBR4 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 RARRES2P8-201ENST00000566335 367 ntBASIC16.88■□□□□ 0.29
LHX3Q9UBR4 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
LHX3Q9UBR4 AL161645.1-201ENST00000622716 1255 ntBASIC16.88■□□□□ 0.29
LHX3Q9UBR4 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms