Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 ALOX12P2-203ENST00000570921 1945 ntBASIC17.41■□□□□ 0.38
PCDH9Q9HC56 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.41■□□□□ 0.38
PCDH9Q9HC56 AC243591.1-201ENST00000452967 1364 ntBASIC17.4■□□□□ 0.38
PCDH9Q9HC56 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 LAGE3P1-201ENST00000425356 484 ntBASIC17.4■□□□□ 0.38
PCDH9Q9HC56 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 AC013467.2-201ENST00000605472 835 ntBASIC17.4■□□□□ 0.38
PCDH9Q9HC56 AL139011.1-202ENST00000642063 584 ntBASIC17.4■□□□□ 0.38
PCDH9Q9HC56 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 AL590787.1-201ENST00000568856 1315 ntBASIC17.4■□□□□ 0.38
PCDH9Q9HC56 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDH9Q9HC56 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
PCDH9Q9HC56 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
PCDH9Q9HC56 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
PCDH9Q9HC56 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
PCDH9Q9HC56 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.39■□□□□ 0.38
PCDH9Q9HC56 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
PCDH9Q9HC56 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 TERC-201ENST00000602385 541 ntBASIC17.39■□□□□ 0.37
PCDH9Q9HC56 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 AL139424.1-201ENST00000607572 797 ntBASIC17.39■□□□□ 0.37
PCDH9Q9HC56 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 AC004706.3-202ENST00000621574 984 ntBASIC17.39■□□□□ 0.37
PCDH9Q9HC56 AC148477.8-201ENST00000624298 468 ntBASIC17.39■□□□□ 0.37
PCDH9Q9HC56 CROCCP1-201ENST00000426910 5675 ntBASIC17.39■□□□□ 0.37
PCDH9Q9HC56 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 AC092364.2-201ENST00000596710 2692 ntBASIC17.39■□□□□ 0.37
PCDH9Q9HC56 GCK-202ENST00000345378 2421 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDH9Q9HC56 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms