Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AC135776.1-201ENST00000319817 2481 ntBASIC17.32■□□□□ 0.36
CDX2Q99626 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX2Q99626 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX2Q99626 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX2Q99626 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX2Q99626 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CDX2Q99626 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CDX2Q99626 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CDX2Q99626 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX2Q99626 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.31■□□□□ 0.36
CDX2Q99626 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.31■□□□□ 0.36
CDX2Q99626 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CDX2Q99626 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.31■□□□□ 0.36
CDX2Q99626 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX2Q99626 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.31■□□□□ 0.36
CDX2Q99626 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX2Q99626 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CDX2Q99626 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX2Q99626 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX2Q99626 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CDX2Q99626 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC17.31■□□□□ 0.36
CDX2Q99626 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX2Q99626 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC17.31■□□□□ 0.36
CDX2Q99626 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC17.31■□□□□ 0.36
CDX2Q99626 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX2Q99626 TMEM198B-204ENST00000484016 896 ntBASIC17.31■□□□□ 0.36
CDX2Q99626 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CDX2Q99626 AC068587.3-201ENST00000526613 355 ntBASIC17.31■□□□□ 0.36
CDX2Q99626 PTP4A1P2-201ENST00000546033 454 ntBASIC17.31■□□□□ 0.36
CDX2Q99626 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC17.31■□□□□ 0.36
CDX2Q99626 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC17.31■□□□□ 0.36
CDX2Q99626 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.31■□□□□ 0.36
CDX2Q99626 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC17.31■□□□□ 0.36
CDX2Q99626 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC17.31■□□□□ 0.36
CDX2Q99626 ATF5-205ENST00000600336 682 ntTSL 2 BASIC17.31■□□□□ 0.36
CDX2Q99626 REXO1L9P-201ENST00000604264 2108 ntBASIC17.31■□□□□ 0.36
CDX2Q99626 AC026740.1-201ENST00000607068 791 ntBASIC17.31■□□□□ 0.36
CDX2Q99626 AC026979.3-201ENST00000607315 403 ntBASIC17.31■□□□□ 0.36
CDX2Q99626 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC17.31■□□□□ 0.36
CDX2Q99626 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.31■□□□□ 0.36
CDX2Q99626 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.31■□□□□ 0.36
CDX2Q99626 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CDX2Q99626 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CDX2Q99626 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX2Q99626 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX2Q99626 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CDX2Q99626 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CDX2Q99626 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.31■□□□□ 0.36
CDX2Q99626 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC17.31■□□□□ 0.36
CDX2Q99626 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CDX2Q99626 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC17.3■□□□□ 0.36
CDX2Q99626 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.3■□□□□ 0.36
CDX2Q99626 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
CDX2Q99626 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CDX2Q99626 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC17.3■□□□□ 0.36
CDX2Q99626 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC17.3■□□□□ 0.36
CDX2Q99626 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
CDX2Q99626 AL442647.2-201ENST00000429864 857 ntBASIC17.3■□□□□ 0.36
CDX2Q99626 AL355864.2-201ENST00000447420 863 ntBASIC17.3■□□□□ 0.36
CDX2Q99626 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
CDX2Q99626 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC17.3■□□□□ 0.36
CDX2Q99626 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC17.3■□□□□ 0.36
CDX2Q99626 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.3■□□□□ 0.36
CDX2Q99626 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC17.3■□□□□ 0.36
CDX2Q99626 ADM-202ENST00000524948 584 ntTSL 2 BASIC17.3■□□□□ 0.36
CDX2Q99626 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC17.3■□□□□ 0.36
CDX2Q99626 AC025048.3-201ENST00000590609 569 ntBASIC17.3■□□□□ 0.36
CDX2Q99626 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC17.3■□□□□ 0.36
CDX2Q99626 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC17.3■□□□□ 0.36
CDX2Q99626 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.3■□□□□ 0.36
CDX2Q99626 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.3■□□□□ 0.36
CDX2Q99626 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
CDX2Q99626 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CDX2Q99626 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
CDX2Q99626 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
CDX2Q99626 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.3■□□□□ 0.36
CDX2Q99626 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CDX2Q99626 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms