Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USP39Q53GS9 AL023806.1-201ENST00000603994 1649 ntBASIC17.12■□□□□ 0.33
USP39Q53GS9 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP39Q53GS9 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USP39Q53GS9 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17.12■□□□□ 0.33
USP39Q53GS9 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.12■□□□□ 0.33
USP39Q53GS9 AC079140.1-201ENST00000508039 487 ntBASIC17.12■□□□□ 0.33
USP39Q53GS9 AL512356.2-201ENST00000546955 174 ntBASIC17.12■□□□□ 0.33
USP39Q53GS9 AL390955.2-201ENST00000603032 514 ntBASIC17.12■□□□□ 0.33
USP39Q53GS9 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP39Q53GS9 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP39Q53GS9 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.12■□□□□ 0.33
USP39Q53GS9 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.12■□□□□ 0.33
USP39Q53GS9 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.12■□□□□ 0.33
USP39Q53GS9 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USP39Q53GS9 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USP39Q53GS9 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
USP39Q53GS9 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP39Q53GS9 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
USP39Q53GS9 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP39Q53GS9 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP39Q53GS9 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
USP39Q53GS9 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
USP39Q53GS9 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP39Q53GS9 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.11■□□□□ 0.33
USP39Q53GS9 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.11■□□□□ 0.33
USP39Q53GS9 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP39Q53GS9 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP39Q53GS9 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.11■□□□□ 0.33
USP39Q53GS9 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP39Q53GS9 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP39Q53GS9 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC17.11■□□□□ 0.33
USP39Q53GS9 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.11■□□□□ 0.33
USP39Q53GS9 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.11■□□□□ 0.33
USP39Q53GS9 AC055876.3-201ENST00000431496 288 ntBASIC17.11■□□□□ 0.33
USP39Q53GS9 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
USP39Q53GS9 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
USP39Q53GS9 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
USP39Q53GS9 AC138649.4-201ENST00000612222 287 ntBASIC17.11■□□□□ 0.33
USP39Q53GS9 AL161645.1-201ENST00000622716 1255 ntBASIC17.11■□□□□ 0.33
USP39Q53GS9 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP39Q53GS9 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
USP39Q53GS9 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
USP39Q53GS9 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP39Q53GS9 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
USP39Q53GS9 AKAP8P1-201ENST00000434743 1349 ntBASIC17.11■□□□□ 0.33
USP39Q53GS9 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.11■□□□□ 0.33
USP39Q53GS9 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USP39Q53GS9 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.11■□□□□ 0.33
USP39Q53GS9 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.11■□□□□ 0.33
USP39Q53GS9 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.11■□□□□ 0.33
USP39Q53GS9 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC17.11■□□□□ 0.33
USP39Q53GS9 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USP39Q53GS9 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.11■□□□□ 0.33
USP39Q53GS9 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
USP39Q53GS9 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP39Q53GS9 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP39Q53GS9 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP39Q53GS9 AC080080.1-201ENST00000625121 2420 ntBASIC17.1■□□□□ 0.33
USP39Q53GS9 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP39Q53GS9 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP39Q53GS9 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
USP39Q53GS9 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.1■□□□□ 0.33
USP39Q53GS9 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
USP39Q53GS9 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP39Q53GS9 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP39Q53GS9 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
USP39Q53GS9 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
USP39Q53GS9 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
USP39Q53GS9 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP39Q53GS9 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.1■□□□□ 0.33
USP39Q53GS9 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.1■□□□□ 0.33
USP39Q53GS9 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.1■□□□□ 0.33
USP39Q53GS9 MIR943-201ENST00000401286 94 ntBASIC17.1■□□□□ 0.33
USP39Q53GS9 HNRNPA1P40-201ENST00000426371 1278 ntBASIC17.1■□□□□ 0.33
USP39Q53GS9 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC17.1■□□□□ 0.33
USP39Q53GS9 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.1■□□□□ 0.33
USP39Q53GS9 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.1■□□□□ 0.33
USP39Q53GS9 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC17.1■□□□□ 0.33
USP39Q53GS9 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.1■□□□□ 0.33
USP39Q53GS9 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP39Q53GS9 RARRES2P8-201ENST00000566335 367 ntBASIC17.1■□□□□ 0.33
USP39Q53GS9 AP001059.3-201ENST00000619053 235 ntBASIC17.1■□□□□ 0.33
USP39Q53GS9 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP39Q53GS9 TUBB3P1-201ENST00000405796 1332 ntBASIC17.1■□□□□ 0.33
USP39Q53GS9 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP39Q53GS9 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP39Q53GS9 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USP39Q53GS9 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP39Q53GS9 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP39Q53GS9 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP39Q53GS9 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP39Q53GS9 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.1■□□□□ 0.33
USP39Q53GS9 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.1■□□□□ 0.33
USP39Q53GS9 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP39Q53GS9 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
USP39Q53GS9 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.09■□□□□ 0.33
USP39Q53GS9 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP39Q53GS9 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USP39Q53GS9 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms