Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 AL135999.2-201ENST00000622438 1686 ntBASIC15.13■□□□□ 0.01
CCDC58Q4VC31 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 COPE-203ENST00000351079 907 ntTSL 2 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 HBZP1-201ENST00000354915 429 ntBASIC15.13■□□□□ 0.01
CCDC58Q4VC31 HLA-A-202ENST00000376806 1854 ntBASIC15.13■□□□□ 0.01
CCDC58Q4VC31 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 FAM220CP-201ENST00000395253 831 ntBASIC15.13■□□□□ 0.01
CCDC58Q4VC31 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 SNX5-210ENST00000481323 562 ntTSL 3 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 DUT-205ENST00000558813 769 ntTSL 2 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 FGF14-AS2-201ENST00000606448 1074 ntBASIC15.13■□□□□ 0.01
CCDC58Q4VC31 AC011558.1-201ENST00000623459 338 ntBASIC15.13■□□□□ 0.01
CCDC58Q4VC31 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 AL353593.2-201ENST00000602529 1483 ntBASIC15.13■□□□□ 0.01
CCDC58Q4VC31 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CCDC58Q4VC31 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 AC009336.1-201ENST00000608941 1553 ntBASIC15.12■□□□□ 0.01
CCDC58Q4VC31 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 KRT8P10-201ENST00000450021 1447 ntBASIC15.12■□□□□ 0.01
CCDC58Q4VC31 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 GUSBP12-201ENST00000513727 720 ntBASIC15.12■□□□□ 0.01
CCDC58Q4VC31 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 LGALS8-AS1-201ENST00000487567 1457 ntBASIC15.12■□□□□ 0.01
CCDC58Q4VC31 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CCDC58Q4VC31 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CCDC58Q4VC31 Z83836.1-201ENST00000624605 1642 ntBASIC15.11■□□□□ 0.01
CCDC58Q4VC31 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms