Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIMK1P53667 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIMK1P53667 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.59■□□□□ 0.25
LIMK1P53667 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
LIMK1P53667 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIMK1P53667 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIMK1P53667 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIMK1P53667 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIMK1P53667 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
LIMK1P53667 MIR346-201ENST00000362234 95 ntBASIC16.59■□□□□ 0.25
LIMK1P53667 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIMK1P53667 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIMK1P53667 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.59■□□□□ 0.25
LIMK1P53667 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
LIMK1P53667 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC16.59■□□□□ 0.25
LIMK1P53667 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC16.59■□□□□ 0.25
LIMK1P53667 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.59■□□□□ 0.25
LIMK1P53667 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIMK1P53667 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.59■□□□□ 0.25
LIMK1P53667 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC16.59■□□□□ 0.25
LIMK1P53667 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.59■□□□□ 0.25
LIMK1P53667 MIR4453-201ENST00000584019 89 ntBASIC16.59■□□□□ 0.25
LIMK1P53667 AL162274.1-201ENST00000617191 1098 ntBASIC16.59■□□□□ 0.25
LIMK1P53667 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.59■□□□□ 0.25
LIMK1P53667 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIMK1P53667 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIMK1P53667 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
LIMK1P53667 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LIMK1P53667 AC138969.3-201ENST00000546612 1459 ntBASIC16.59■□□□□ 0.25
LIMK1P53667 AC138932.2-201ENST00000548268 1459 ntBASIC16.59■□□□□ 0.25
LIMK1P53667 AC126755.4-201ENST00000549796 1459 ntBASIC16.59■□□□□ 0.25
LIMK1P53667 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIMK1P53667 FLJ13224-201ENST00000313737 1514 ntBASIC16.59■□□□□ 0.25
LIMK1P53667 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.59■□□□□ 0.25
LIMK1P53667 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.59■□□□□ 0.25
LIMK1P53667 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIMK1P53667 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LIMK1P53667 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
LIMK1P53667 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
LIMK1P53667 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
LIMK1P53667 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.58■□□□□ 0.25
LIMK1P53667 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LIMK1P53667 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LIMK1P53667 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.58■□□□□ 0.25
LIMK1P53667 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIMK1P53667 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIMK1P53667 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
LIMK1P53667 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LIMK1P53667 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIMK1P53667 HMGA1P7-201ENST00000406908 502 ntBASIC16.58■□□□□ 0.24
LIMK1P53667 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC16.58■□□□□ 0.24
LIMK1P53667 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.58■□□□□ 0.24
LIMK1P53667 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.58■□□□□ 0.24
LIMK1P53667 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.58■□□□□ 0.24
LIMK1P53667 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIMK1P53667 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LIMK1P53667 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC16.58■□□□□ 0.24
LIMK1P53667 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIMK1P53667 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC16.58■□□□□ 0.24
LIMK1P53667 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.58■□□□□ 0.24
LIMK1P53667 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
LIMK1P53667 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
LIMK1P53667 AP000842.3-202ENST00000569238 1080 ntBASIC16.58■□□□□ 0.24
LIMK1P53667 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.58■□□□□ 0.24
LIMK1P53667 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.58■□□□□ 0.24
LIMK1P53667 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC16.58■□□□□ 0.24
LIMK1P53667 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
LIMK1P53667 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIMK1P53667 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIMK1P53667 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.58■□□□□ 0.24
LIMK1P53667 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LIMK1P53667 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.58■□□□□ 0.24
LIMK1P53667 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIMK1P53667 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIMK1P53667 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIMK1P53667 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.24
LIMK1P53667 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.58■□□□□ 0.24
LIMK1P53667 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIMK1P53667 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIMK1P53667 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LIMK1P53667 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIMK1P53667 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIMK1P53667 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
LIMK1P53667 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIMK1P53667 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LIMK1P53667 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIMK1P53667 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LIMK1P53667 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
LIMK1P53667 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.57■□□□□ 0.24
LIMK1P53667 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
LIMK1P53667 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
LIMK1P53667 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
LIMK1P53667 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.57■□□□□ 0.24
LIMK1P53667 WASH6P-202ENST00000359512 1437 ntBASIC16.57■□□□□ 0.24
LIMK1P53667 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
LIMK1P53667 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
LIMK1P53667 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.57■□□□□ 0.24
LIMK1P53667 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.57■□□□□ 0.24
LIMK1P53667 AL353779.1-201ENST00000434793 351 ntBASIC16.57■□□□□ 0.24
LIMK1P53667 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms