Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CX3CR1P49238 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CX3CR1P49238 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.84□□□□□ -0.03
CX3CR1P49238 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CX3CR1P49238 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC14.84□□□□□ -0.03
CX3CR1P49238 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CX3CR1P49238 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
CX3CR1P49238 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CX3CR1P49238 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CX3CR1P49238 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
CX3CR1P49238 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CX3CR1P49238 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CX3CR1P49238 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CX3CR1P49238 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CX3CR1P49238 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC14.84□□□□□ -0.03
CX3CR1P49238 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC14.84□□□□□ -0.03
CX3CR1P49238 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CX3CR1P49238 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CX3CR1P49238 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CX3CR1P49238 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC14.84□□□□□ -0.03
CX3CR1P49238 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
CX3CR1P49238 LSM5-204ENST00000409909 740 ntTSL 2 BASIC14.84□□□□□ -0.03
CX3CR1P49238 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC14.84□□□□□ -0.03
CX3CR1P49238 KRT18P31-201ENST00000506277 1292 ntBASIC14.84□□□□□ -0.03
CX3CR1P49238 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC14.84□□□□□ -0.03
CX3CR1P49238 PRELID1P1-202ENST00000567272 903 ntBASIC14.84□□□□□ -0.03
CX3CR1P49238 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CX3CR1P49238 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC14.84□□□□□ -0.03
CX3CR1P49238 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC14.84□□□□□ -0.03
CX3CR1P49238 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CX3CR1P49238 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC14.84□□□□□ -0.03
CX3CR1P49238 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CX3CR1P49238 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CX3CR1P49238 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CX3CR1P49238 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CX3CR1P49238 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CX3CR1P49238 AL391256.1-201ENST00000443260 1855 ntBASIC14.84□□□□□ -0.03
CX3CR1P49238 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC14.84□□□□□ -0.03
CX3CR1P49238 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
CX3CR1P49238 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CX3CR1P49238 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
CX3CR1P49238 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
CX3CR1P49238 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC14.83□□□□□ -0.03
CX3CR1P49238 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
CX3CR1P49238 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CX3CR1P49238 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC14.83□□□□□ -0.03
CX3CR1P49238 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
CX3CR1P49238 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.03
CX3CR1P49238 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC14.83□□□□□ -0.03
CX3CR1P49238 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
CX3CR1P49238 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.83□□□□□ -0.04
CX3CR1P49238 HLA-A-202ENST00000376806 1854 ntBASIC14.83□□□□□ -0.04
CX3CR1P49238 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC14.83□□□□□ -0.04
CX3CR1P49238 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC14.83□□□□□ -0.04
CX3CR1P49238 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC14.83□□□□□ -0.04
CX3CR1P49238 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC14.83□□□□□ -0.04
CX3CR1P49238 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC14.83□□□□□ -0.04
CX3CR1P49238 TPM1-218ENST00000559281 851 ntTSL 5 BASIC14.83□□□□□ -0.04
CX3CR1P49238 AC008608.2-201ENST00000606089 416 ntBASIC14.83□□□□□ -0.04
CX3CR1P49238 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC14.83□□□□□ -0.04
CX3CR1P49238 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CX3CR1P49238 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC14.83□□□□□ -0.04
CX3CR1P49238 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC14.83□□□□□ -0.04
CX3CR1P49238 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC14.83□□□□□ -0.04
CX3CR1P49238 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
CX3CR1P49238 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
CX3CR1P49238 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14.83□□□□□ -0.04
CX3CR1P49238 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC14.83□□□□□ -0.04
CX3CR1P49238 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CX3CR1P49238 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC14.82□□□□□ -0.04
CX3CR1P49238 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CX3CR1P49238 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
CX3CR1P49238 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CX3CR1P49238 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CX3CR1P49238 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC14.82□□□□□ -0.04
CX3CR1P49238 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CX3CR1P49238 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CX3CR1P49238 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
CX3CR1P49238 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CX3CR1P49238 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms