Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CXCL12P48061 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CXCL12P48061 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL12P48061 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CXCL12P48061 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.61■□□□□ 0.25
CXCL12P48061 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL12P48061 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL12P48061 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CXCL12P48061 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL12P48061 FRMD8P1-201ENST00000440433 1524 ntBASIC16.61■□□□□ 0.25
CXCL12P48061 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL12P48061 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL12P48061 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL12P48061 AC104581.1-202ENST00000635932 2618 ntBASIC16.61■□□□□ 0.25
CXCL12P48061 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CXCL12P48061 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL12P48061 AC098818.2-201ENST00000564925 2320 ntBASIC16.61■□□□□ 0.25
CXCL12P48061 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL12P48061 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL12P48061 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL12P48061 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL12P48061 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC16.61■□□□□ 0.25
CXCL12P48061 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CXCL12P48061 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL12P48061 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC16.61■□□□□ 0.25
CXCL12P48061 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC16.61■□□□□ 0.25
CXCL12P48061 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.61■□□□□ 0.25
CXCL12P48061 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
CXCL12P48061 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC16.61■□□□□ 0.25
CXCL12P48061 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC16.61■□□□□ 0.25
CXCL12P48061 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
CXCL12P48061 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC16.61■□□□□ 0.25
CXCL12P48061 AC007431.3-201ENST00000623221 587 ntBASIC16.61■□□□□ 0.25
CXCL12P48061 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL12P48061 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL12P48061 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL12P48061 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL12P48061 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CXCL12P48061 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL12P48061 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL12P48061 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
CXCL12P48061 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CXCL12P48061 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
CXCL12P48061 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL12P48061 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL12P48061 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
CXCL12P48061 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL12P48061 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL12P48061 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL12P48061 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL12P48061 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL12P48061 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL12P48061 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL12P48061 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC16.6■□□□□ 0.25
CXCL12P48061 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL12P48061 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
CXCL12P48061 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL12P48061 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.6■□□□□ 0.25
CXCL12P48061 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.6■□□□□ 0.25
CXCL12P48061 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL12P48061 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL12P48061 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CXCL12P48061 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.6■□□□□ 0.25
CXCL12P48061 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL12P48061 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.6■□□□□ 0.25
CXCL12P48061 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.6■□□□□ 0.25
CXCL12P48061 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.6■□□□□ 0.25
CXCL12P48061 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL12P48061 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CXCL12P48061 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.6■□□□□ 0.25
CXCL12P48061 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.6■□□□□ 0.25
CXCL12P48061 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
CXCL12P48061 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
CXCL12P48061 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL12P48061 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL12P48061 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC16.59■□□□□ 0.25
CXCL12P48061 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL12P48061 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.59■□□□□ 0.25
CXCL12P48061 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.59■□□□□ 0.25
CXCL12P48061 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CXCL12P48061 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
CXCL12P48061 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL12P48061 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.59■□□□□ 0.25
CXCL12P48061 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL12P48061 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL12P48061 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CXCL12P48061 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.59■□□□□ 0.25
CXCL12P48061 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CXCL12P48061 AC044860.1-202ENST00000559481 777 ntBASIC16.59■□□□□ 0.25
CXCL12P48061 WASH4P-201ENST00000564273 1246 ntBASIC16.59■□□□□ 0.25
CXCL12P48061 APOC4-201ENST00000591600 348 ntTSL 3 BASIC16.59■□□□□ 0.25
CXCL12P48061 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.59■□□□□ 0.25
CXCL12P48061 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.59■□□□□ 0.25
CXCL12P48061 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL12P48061 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
CXCL12P48061 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CXCL12P48061 SLC7A15P-201ENST00000424028 1363 ntBASIC16.59■□□□□ 0.25
CXCL12P48061 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
CXCL12P48061 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CXCL12P48061 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms