Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SCN4AP35499 DUX4L45-201ENST00000566406 1057 ntBASIC19.55■□□□□ 0.72
SCN4AP35499 ABBA01031660.1-201ENST00000635219 756 ntBASIC19.55■□□□□ 0.72
SCN4AP35499 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN4AP35499 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.55■□□□□ 0.72
SCN4AP35499 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SCN4AP35499 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.55■□□□□ 0.72
SCN4AP35499 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC19.55■□□□□ 0.72
SCN4AP35499 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SCN4AP35499 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN4AP35499 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SCN4AP35499 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN4AP35499 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN4AP35499 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SCN4AP35499 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
SCN4AP35499 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SCN4AP35499 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC19.55■□□□□ 0.72
SCN4AP35499 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.55■□□□□ 0.72
SCN4AP35499 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
SCN4AP35499 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
SCN4AP35499 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC19.55■□□□□ 0.72
SCN4AP35499 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SCN4AP35499 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC19.55■□□□□ 0.72
SCN4AP35499 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.55■□□□□ 0.72
SCN4AP35499 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC19.55■□□□□ 0.72
SCN4AP35499 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SCN4AP35499 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SCN4AP35499 AC093525.9-201ENST00000624961 1746 ntBASIC19.54■□□□□ 0.72
SCN4AP35499 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN4AP35499 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC19.54■□□□□ 0.72
SCN4AP35499 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.54■□□□□ 0.72
SCN4AP35499 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN4AP35499 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN4AP35499 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN4AP35499 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN4AP35499 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN4AP35499 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SCN4AP35499 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN4AP35499 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN4AP35499 APOA1-205ENST00000375329 927 ntTSL 2 BASIC19.54■□□□□ 0.72
SCN4AP35499 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SCN4AP35499 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
SCN4AP35499 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC19.54■□□□□ 0.72
SCN4AP35499 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC19.54■□□□□ 0.72
SCN4AP35499 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN4AP35499 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC19.54■□□□□ 0.72
SCN4AP35499 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN4AP35499 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.54■□□□□ 0.72
SCN4AP35499 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN4AP35499 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN4AP35499 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.54■□□□□ 0.72
SCN4AP35499 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN4AP35499 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SCN4AP35499 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 VMO1-203ENST00000416307 712 ntTSL 2 BASIC19.53■□□□□ 0.72
SCN4AP35499 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 IGHJ2P-201ENST00000454480 60 ntBASIC19.53■□□□□ 0.72
SCN4AP35499 AC068587.3-201ENST00000526613 355 ntBASIC19.53■□□□□ 0.72
SCN4AP35499 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC19.53■□□□□ 0.72
SCN4AP35499 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SCN4AP35499 AC009542.2-202ENST00000619004 1067 ntBASIC19.53■□□□□ 0.72
SCN4AP35499 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
SCN4AP35499 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SCN4AP35499 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC19.53■□□□□ 0.72
SCN4AP35499 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 AC133963.1-201ENST00000504166 1679 ntBASIC19.53■□□□□ 0.72
SCN4AP35499 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 AGER-203ENST00000375065 665 ntTSL 2 BASIC19.53■□□□□ 0.72
SCN4AP35499 AC007551.1-201ENST00000457394 519 ntBASIC19.53■□□□□ 0.72
SCN4AP35499 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC19.53■□□□□ 0.72
SCN4AP35499 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SCN4AP35499 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC19.52■□□□□ 0.72
SCN4AP35499 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
SCN4AP35499 AC006538.1-201ENST00000567905 1585 ntBASIC19.52■□□□□ 0.72
SCN4AP35499 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SCN4AP35499 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SCN4AP35499 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
SCN4AP35499 DEK-201ENST00000244776 1441 ntTSL 2 BASIC19.52■□□□□ 0.72
SCN4AP35499 KRT8P22-201ENST00000562317 1415 ntBASIC19.52■□□□□ 0.72
SCN4AP35499 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SCN4AP35499 TP73-213ENST00000604479 1623 ntTSL 5 BASIC19.52■□□□□ 0.72
SCN4AP35499 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC19.52■□□□□ 0.72
SCN4AP35499 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC19.52■□□□□ 0.72
SCN4AP35499 FTH1P14-201ENST00000482930 551 ntBASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms