Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 KRT18P65-201ENST00000439811 1286 ntBASIC16.35■□□□□ 0.21
LDLRP01130 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.35■□□□□ 0.21
LDLRP01130 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
LDLRP01130 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.35■□□□□ 0.21
LDLRP01130 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC16.35■□□□□ 0.21
LDLRP01130 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.35■□□□□ 0.21
LDLRP01130 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.35■□□□□ 0.21
LDLRP01130 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.35■□□□□ 0.21
LDLRP01130 BNIP3P18-201ENST00000593976 575 ntBASIC16.35■□□□□ 0.21
LDLRP01130 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 AL139327.4-201ENST00000612362 153 ntBASIC16.35■□□□□ 0.21
LDLRP01130 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.35■□□□□ 0.21
LDLRP01130 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 AC092171.3-201ENST00000610122 2651 ntBASIC16.35■□□□□ 0.21
LDLRP01130 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.35■□□□□ 0.21
LDLRP01130 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.35■□□□□ 0.21
LDLRP01130 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 AC092053.1-201ENST00000605787 1936 ntBASIC16.35■□□□□ 0.21
LDLRP01130 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.35■□□□□ 0.21
LDLRP01130 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LDLRP01130 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.34■□□□□ 0.21
LDLRP01130 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.34■□□□□ 0.21
LDLRP01130 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.34■□□□□ 0.21
LDLRP01130 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
LDLRP01130 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.34■□□□□ 0.21
LDLRP01130 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
LDLRP01130 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.34■□□□□ 0.21
LDLRP01130 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
LDLRP01130 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.34■□□□□ 0.21
LDLRP01130 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
LDLRP01130 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.34■□□□□ 0.21
LDLRP01130 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
LDLRP01130 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.34■□□□□ 0.21
LDLRP01130 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC16.34■□□□□ 0.21
LDLRP01130 AC027796.2-201ENST00000575326 344 ntBASIC16.34■□□□□ 0.21
LDLRP01130 AC024563.2-201ENST00000603282 481 ntBASIC16.34■□□□□ 0.21
LDLRP01130 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 FAM215A-202ENST00000632077 792 ntBASIC16.34■□□□□ 0.21
LDLRP01130 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 AL513523.2-202ENST00000427283 2040 ntBASIC16.34■□□□□ 0.21
LDLRP01130 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
LDLRP01130 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.34■□□□□ 0.21
LDLRP01130 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
LDLRP01130 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.34■□□□□ 0.21
LDLRP01130 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.34■□□□□ 0.21
LDLRP01130 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
LDLRP01130 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
LDLRP01130 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
LDLRP01130 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.21
LDLRP01130 AC093525.9-201ENST00000624961 1746 ntBASIC16.33■□□□□ 0.21
LDLRP01130 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
LDLRP01130 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
LDLRP01130 AL596257.1-201ENST00000641463 2694 ntBASIC16.33■□□□□ 0.21
LDLRP01130 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LDLRP01130 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.33■□□□□ 0.21
LDLRP01130 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.21
LDLRP01130 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
LDLRP01130 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.33■□□□□ 0.21
LDLRP01130 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.21
LDLRP01130 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.21
LDLRP01130 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
LDLRP01130 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LDLRP01130 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LDLRP01130 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDLRP01130 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LDLRP01130 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LDLRP01130 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.33■□□□□ 0.2
LDLRP01130 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms