Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AC087163.2-201ENST00000457299 853 ntBASIC16.18■□□□□ 0.18
SEMA3DO95025 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SEMA3DO95025 AF186996.4-201ENST00000467186 377 ntBASIC16.18■□□□□ 0.18
SEMA3DO95025 AC136632.2-201ENST00000512891 861 ntBASIC16.18■□□□□ 0.18
SEMA3DO95025 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.18■□□□□ 0.18
SEMA3DO95025 AC013467.2-201ENST00000605472 835 ntBASIC16.18■□□□□ 0.18
SEMA3DO95025 AL691432.3-201ENST00000621860 400 ntBASIC16.18■□□□□ 0.18
SEMA3DO95025 AC008735.5-201ENST00000623544 497 ntBASIC16.18■□□□□ 0.18
SEMA3DO95025 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
SEMA3DO95025 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SEMA3DO95025 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SEMA3DO95025 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SEMA3DO95025 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
SEMA3DO95025 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SEMA3DO95025 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SEMA3DO95025 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SEMA3DO95025 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
SEMA3DO95025 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SEMA3DO95025 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SEMA3DO95025 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SEMA3DO95025 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
SEMA3DO95025 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
SEMA3DO95025 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SEMA3DO95025 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
SEMA3DO95025 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
SEMA3DO95025 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SEMA3DO95025 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SEMA3DO95025 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.17■□□□□ 0.18
SEMA3DO95025 OR6D1P-203ENST00000641209 4860 ntBASIC16.17■□□□□ 0.18
SEMA3DO95025 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.17■□□□□ 0.18
SEMA3DO95025 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SEMA3DO95025 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
SEMA3DO95025 PI4KAP1-204ENST00000612579 1703 ntBASIC16.17■□□□□ 0.18
SEMA3DO95025 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
SEMA3DO95025 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.17■□□□□ 0.18
SEMA3DO95025 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
SEMA3DO95025 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SEMA3DO95025 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SEMA3DO95025 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
SEMA3DO95025 AL645728.1-201ENST00000366221 2101 ntBASIC16.17■□□□□ 0.18
SEMA3DO95025 AC073621.1-201ENST00000392730 636 ntBASIC16.17■□□□□ 0.18
SEMA3DO95025 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SEMA3DO95025 FAM197Y8-203ENST00000450145 560 ntBASIC16.17■□□□□ 0.18
SEMA3DO95025 RPS15P9-201ENST00000494093 319 ntBASIC16.17■□□□□ 0.18
SEMA3DO95025 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.17■□□□□ 0.18
SEMA3DO95025 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
SEMA3DO95025 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SEMA3DO95025 GGTLC5P-201ENST00000617623 998 ntBASIC16.17■□□□□ 0.18
SEMA3DO95025 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC16.17■□□□□ 0.18
SEMA3DO95025 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SEMA3DO95025 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
SEMA3DO95025 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SEMA3DO95025 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SEMA3DO95025 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SEMA3DO95025 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
SEMA3DO95025 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SEMA3DO95025 RNF216P1-203ENST00000404404 2427 ntBASIC16.17■□□□□ 0.18
SEMA3DO95025 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SEMA3DO95025 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SEMA3DO95025 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.17■□□□□ 0.18
SEMA3DO95025 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SEMA3DO95025 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
SEMA3DO95025 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.17■□□□□ 0.18
SEMA3DO95025 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
SEMA3DO95025 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.16■□□□□ 0.18
SEMA3DO95025 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.16■□□□□ 0.18
SEMA3DO95025 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SEMA3DO95025 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SEMA3DO95025 AC002310.6-201ENST00000624451 1377 ntBASIC16.16■□□□□ 0.18
SEMA3DO95025 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.16■□□□□ 0.18
SEMA3DO95025 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SEMA3DO95025 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
SEMA3DO95025 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 RPS2P28-201ENST00000314255 741 ntBASIC16.16■□□□□ 0.18
SEMA3DO95025 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.16■□□□□ 0.18
SEMA3DO95025 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.16■□□□□ 0.18
SEMA3DO95025 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.16■□□□□ 0.18
SEMA3DO95025 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.16■□□□□ 0.18
SEMA3DO95025 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SEMA3DO95025 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.16■□□□□ 0.18
SEMA3DO95025 RN7SL510P-201ENST00000581311 263 ntBASIC16.16■□□□□ 0.18
SEMA3DO95025 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.16■□□□□ 0.18
SEMA3DO95025 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SEMA3DO95025 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.16■□□□□ 0.18
SEMA3DO95025 MIR1199-201ENST00000621445 119 ntBASIC16.16■□□□□ 0.18
SEMA3DO95025 PGM5P2-202ENST00000637225 1043 ntBASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms