Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LDB3O75112 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LDB3O75112 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LDB3O75112 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LDB3O75112 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LDB3O75112 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
LDB3O75112 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.85■□□□□ 0.13
LDB3O75112 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LDB3O75112 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
LDB3O75112 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LDB3O75112 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LDB3O75112 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
LDB3O75112 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.85■□□□□ 0.13
LDB3O75112 KRT18P3-201ENST00000451602 1288 ntBASIC15.85■□□□□ 0.13
LDB3O75112 AL513480.1-201ENST00000451731 511 ntBASIC15.85■□□□□ 0.13
LDB3O75112 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.85■□□□□ 0.13
LDB3O75112 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.85■□□□□ 0.13
LDB3O75112 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.85■□□□□ 0.13
LDB3O75112 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC15.85■□□□□ 0.13
LDB3O75112 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LDB3O75112 MPDU1-223ENST00000582151 728 ntBASIC15.85■□□□□ 0.13
LDB3O75112 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.85■□□□□ 0.13
LDB3O75112 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LDB3O75112 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LDB3O75112 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LDB3O75112 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.85■□□□□ 0.13
LDB3O75112 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LDB3O75112 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LDB3O75112 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LDB3O75112 AGGF1P2-201ENST00000426656 2106 ntBASIC15.85■□□□□ 0.13
LDB3O75112 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LDB3O75112 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.84■□□□□ 0.13
LDB3O75112 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDB3O75112 AL353732.1-201ENST00000569618 1459 ntBASIC15.84■□□□□ 0.13
LDB3O75112 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.84■□□□□ 0.13
LDB3O75112 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LDB3O75112 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.84■□□□□ 0.13
LDB3O75112 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.84■□□□□ 0.13
LDB3O75112 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDB3O75112 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LDB3O75112 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDB3O75112 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDB3O75112 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
LDB3O75112 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LDB3O75112 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.84■□□□□ 0.13
LDB3O75112 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDB3O75112 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDB3O75112 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDB3O75112 AL591424.1-201ENST00000442569 1213 ntBASIC15.84■□□□□ 0.13
LDB3O75112 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC15.84■□□□□ 0.13
LDB3O75112 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
LDB3O75112 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
LDB3O75112 POLD2P1-201ENST00000511220 997 ntBASIC15.84■□□□□ 0.13
LDB3O75112 RNA5SP416-201ENST00000516838 111 ntBASIC15.84■□□□□ 0.13
LDB3O75112 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.84■□□□□ 0.13
LDB3O75112 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.84■□□□□ 0.13
LDB3O75112 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.84■□□□□ 0.13
LDB3O75112 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LDB3O75112 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.84■□□□□ 0.13
LDB3O75112 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDB3O75112 AC005412.3-201ENST00000580309 715 ntBASIC15.84■□□□□ 0.13
LDB3O75112 AL671883.3-201ENST00000603274 991 ntBASIC15.84■□□□□ 0.13
LDB3O75112 FAM197Y3-203ENST00000618346 717 ntBASIC15.84■□□□□ 0.13
LDB3O75112 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.84■□□□□ 0.13
LDB3O75112 AL603756.1-201ENST00000606511 2163 ntBASIC15.84■□□□□ 0.13
LDB3O75112 UBALD1-205ENST00000590891 2641 ntBASIC15.84■□□□□ 0.13
LDB3O75112 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDB3O75112 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDB3O75112 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDB3O75112 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDB3O75112 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LDB3O75112 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LDB3O75112 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.84■□□□□ 0.13
LDB3O75112 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDB3O75112 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
LDB3O75112 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
LDB3O75112 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.84■□□□□ 0.13
LDB3O75112 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
LDB3O75112 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
LDB3O75112 AC092171.3-201ENST00000610122 2651 ntBASIC15.83■□□□□ 0.13
LDB3O75112 AC006277.1-201ENST00000624348 1610 ntBASIC15.83■□□□□ 0.13
LDB3O75112 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LDB3O75112 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDB3O75112 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDB3O75112 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDB3O75112 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDB3O75112 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDB3O75112 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
LDB3O75112 AP002490.2-201ENST00000524791 560 ntBASIC15.83■□□□□ 0.12
LDB3O75112 KRT18P58-201ENST00000527480 1120 ntBASIC15.83■□□□□ 0.12
LDB3O75112 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.83■□□□□ 0.12
LDB3O75112 AC096734.2-201ENST00000562054 433 ntBASIC15.83■□□□□ 0.12
LDB3O75112 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.83■□□□□ 0.12
LDB3O75112 AC091167.2-201ENST00000579581 588 ntBASIC15.83■□□□□ 0.12
LDB3O75112 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.83■□□□□ 0.12
LDB3O75112 WDR88-203ENST00000592765 651 ntTSL 5 BASIC15.83■□□□□ 0.12
LDB3O75112 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
LDB3O75112 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LDB3O75112 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
LDB3O75112 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms