Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC54Q8NEL0 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 FLJ38576-201ENST00000623820 2459 ntBASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 AC097637.2-201ENST00000624096 1997 ntBASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 MPI-205ENST00000562606 1052 ntTSL 3 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 PCDHA14-201ENST00000506751 2298 ntBASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 FOS-208ENST00000555686 1496 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
CCDC54Q8NEL0 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 LINC00982-205ENST00000420957 435 ntBASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 ISCU-203ENST00000431221 799 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 RBSN-204ENST00000449050 903 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 KRT16P4-201ENST00000453883 522 ntBASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 MIR5100-201ENST00000579544 119 ntBASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 AC013467.2-201ENST00000605472 835 ntBASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC54Q8NEL0 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms