Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXC11O43248 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXC11O43248 AC107890.1-201ENST00000422478 521 ntBASIC17.1■□□□□ 0.33
HOXC11O43248 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXC11O43248 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.1■□□□□ 0.33
HOXC11O43248 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.1■□□□□ 0.33
HOXC11O43248 AC125807.1-201ENST00000483097 614 ntBASIC17.1■□□□□ 0.33
HOXC11O43248 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXC11O43248 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.1■□□□□ 0.33
HOXC11O43248 ALG1L8P-201ENST00000533887 760 ntBASIC17.1■□□□□ 0.33
HOXC11O43248 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.1■□□□□ 0.33
HOXC11O43248 AC013467.2-201ENST00000605472 835 ntBASIC17.1■□□□□ 0.33
HOXC11O43248 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.1■□□□□ 0.33
HOXC11O43248 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXC11O43248 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXC11O43248 AC067852.2-201ENST00000590513 2313 ntBASIC17.1■□□□□ 0.33
HOXC11O43248 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXC11O43248 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
HOXC11O43248 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HOXC11O43248 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXC11O43248 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HOXC11O43248 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HOXC11O43248 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC11O43248 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
HOXC11O43248 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.09■□□□□ 0.33
HOXC11O43248 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC11O43248 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.09■□□□□ 0.33
HOXC11O43248 WRB-204ENST00000398753 699 ntTSL 3 BASIC17.09■□□□□ 0.33
HOXC11O43248 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.09■□□□□ 0.33
HOXC11O43248 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.09■□□□□ 0.33
HOXC11O43248 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.09■□□□□ 0.33
HOXC11O43248 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
HOXC11O43248 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.09■□□□□ 0.33
HOXC11O43248 KRT18P34-201ENST00000488218 1270 ntBASIC17.09■□□□□ 0.33
HOXC11O43248 RNA5SP421-201ENST00000516864 134 ntBASIC17.09■□□□□ 0.33
HOXC11O43248 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17.09■□□□□ 0.33
HOXC11O43248 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.09■□□□□ 0.33
HOXC11O43248 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.09■□□□□ 0.33
HOXC11O43248 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.09■□□□□ 0.33
HOXC11O43248 AL138918.1-201ENST00000568306 659 ntBASIC17.09■□□□□ 0.33
HOXC11O43248 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.09■□□□□ 0.33
HOXC11O43248 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
HOXC11O43248 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
HOXC11O43248 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
HOXC11O43248 AC008677.1-201ENST00000519230 1561 ntBASIC17.09■□□□□ 0.33
HOXC11O43248 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC11O43248 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC11O43248 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC11O43248 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC11O43248 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.09■□□□□ 0.33
HOXC11O43248 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
HOXC11O43248 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC11O43248 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.09■□□□□ 0.33
HOXC11O43248 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.09■□□□□ 0.33
HOXC11O43248 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
HOXC11O43248 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
HOXC11O43248 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.08■□□□□ 0.33
HOXC11O43248 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
HOXC11O43248 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
HOXC11O43248 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HOXC11O43248 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
HOXC11O43248 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HOXC11O43248 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HOXC11O43248 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.08■□□□□ 0.32
HOXC11O43248 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC11O43248 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.08■□□□□ 0.32
HOXC11O43248 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC17.08■□□□□ 0.32
HOXC11O43248 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC11O43248 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC11O43248 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC11O43248 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC11O43248 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.08■□□□□ 0.32
HOXC11O43248 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC11O43248 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC17.08■□□□□ 0.32
HOXC11O43248 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC11O43248 AC055876.3-201ENST00000431496 288 ntBASIC17.08■□□□□ 0.32
HOXC11O43248 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.08■□□□□ 0.32
HOXC11O43248 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.08■□□□□ 0.32
HOXC11O43248 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.08■□□□□ 0.32
HOXC11O43248 AC105233.2-201ENST00000523697 349 ntBASIC17.08■□□□□ 0.32
HOXC11O43248 AF228730.5-201ENST00000530288 346 ntBASIC17.08■□□□□ 0.32
HOXC11O43248 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC11O43248 AC140878.1-201ENST00000565277 250 ntBASIC17.08■□□□□ 0.32
HOXC11O43248 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.08■□□□□ 0.32
HOXC11O43248 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.08■□□□□ 0.32
HOXC11O43248 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.08■□□□□ 0.32
HOXC11O43248 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC17.08■□□□□ 0.32
HOXC11O43248 AC073389.1-201ENST00000595595 795 ntBASIC17.08■□□□□ 0.32
HOXC11O43248 AC138649.4-201ENST00000612222 287 ntBASIC17.08■□□□□ 0.32
HOXC11O43248 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC11O43248 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
HOXC11O43248 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC11O43248 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC11O43248 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC11O43248 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC11O43248 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.08■□□□□ 0.32
HOXC11O43248 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC11O43248 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC11O43248 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HOXC11O43248 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms