Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 PNMT-202ENST00000394246 821 ntTSL 2 BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 ACTG1P4-201ENST00000425123 1122 ntBASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 AL078644.1-201ENST00000609881 752 ntBASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 FLJ13224-201ENST00000313737 1514 ntBASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TMX2-CTNND1H3BSU7 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 AC132872.4-202ENST00000622924 2756 ntBASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 KRT19P2-202ENST00000557173 1012 ntBASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.62■□□□□ 0.25
TMX2-CTNND1H3BSU7 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 IGLL3P-201ENST00000412472 434 ntBASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 AP000344.2-201ENST00000512987 629 ntBASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 RFPL4AP1-201ENST00000530883 850 ntBASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.61■□□□□ 0.25
TMX2-CTNND1H3BSU7 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms