Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 AC016027.1-202ENST00000607927 1699 ntBASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 NOP2-220ENST00000545915 630 ntTSL 2 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 RARRES2P9-201ENST00000565168 469 ntBASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 LYSMD4-203ENST00000378904 2122 ntBASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 AL354751.1-201ENST00000412768 1863 ntBASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.16■□□□□ 0.18
PCDHGA1Q9Y5H4 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 AC138028.4-201ENST00000564984 1845 ntBASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 AC142381.1-201ENST00000426099 345 ntBASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 SPTLC1P1-201ENST00000447199 261 ntBASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 KRT17P7-201ENST00000451704 1104 ntBASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 AL133373.2-201ENST00000623187 2828 ntBASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC16.15■□□□□ 0.18
PCDHGA1Q9Y5H4 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 LINC00304-203ENST00000565008 1864 ntBASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 NAA50-208ENST00000497255 789 ntTSL 5 BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.14■□□□□ 0.17
PCDHGA1Q9Y5H4 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms