Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AL121912.1-201ENST00000603683 238 ntBASIC16.83■□□□□ 0.28
VPS9D1Q9Y2B5 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS9D1Q9Y2B5 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
VPS9D1Q9Y2B5 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS9D1Q9Y2B5 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS9D1Q9Y2B5 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
VPS9D1Q9Y2B5 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS9D1Q9Y2B5 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 AC084018.2-201ENST00000613093 2607 ntBASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 ELK2BP-201ENST00000415014 1224 ntBASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 FAAHP1-202ENST00000446499 1238 ntBASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 AC087163.2-201ENST00000457299 853 ntBASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 RNPS1P1-201ENST00000507437 918 ntBASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 AL034417.3-201ENST00000641100 1043 ntBASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 FLJ38576-201ENST00000623820 2459 ntBASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 AL645728.1-201ENST00000366221 2101 ntBASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
VPS9D1Q9Y2B5 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 AC006504.4-201ENST00000592118 1568 ntBASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 AC004870.1-201ENST00000315132 882 ntBASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 KRT18P27-201ENST00000427733 1299 ntBASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 AC091167.2-201ENST00000579581 588 ntBASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 AL691432.3-201ENST00000621860 400 ntBASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 AC008735.5-201ENST00000623544 497 ntBASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 RNF216P1-203ENST00000404404 2427 ntBASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 AC006277.1-201ENST00000624348 1610 ntBASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.81■□□□□ 0.28
VPS9D1Q9Y2B5 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS9D1Q9Y2B5 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS9D1Q9Y2B5 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS9D1Q9Y2B5 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
VPS9D1Q9Y2B5 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.8■□□□□ 0.28
VPS9D1Q9Y2B5 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS9D1Q9Y2B5 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.8■□□□□ 0.28
VPS9D1Q9Y2B5 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS9D1Q9Y2B5 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS9D1Q9Y2B5 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS9D1Q9Y2B5 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
VPS9D1Q9Y2B5 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS9D1Q9Y2B5 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.8■□□□□ 0.28
VPS9D1Q9Y2B5 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VPS9D1Q9Y2B5 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms