Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 AC131009.4-201ENST00000624048 1740 ntBASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 AL022342.1-201ENST00000400363 863 ntBASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 AP000347.1-202ENST00000435868 847 ntBASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 AC018845.2-201ENST00000568326 409 ntBASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 MIR4492-201ENST00000581627 80 ntBASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 PIN1-206ENST00000587625 878 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 AC084018.2-201ENST00000613093 2607 ntBASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS54Q9P1Q0 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 AL671710.1-201ENST00000610245 2349 ntBASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 AL353732.1-201ENST00000569618 1459 ntBASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 ATP6V0CP3-201ENST00000417255 467 ntBASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 AC091167.2-201ENST00000579581 588 ntBASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 AC079328.2-201ENST00000561241 3354 ntBASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS54Q9P1Q0 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 AMT-206ENST00000458307 1860 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS54Q9P1Q0 AP002490.2-201ENST00000524791 560 ntBASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms