Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
TRAIPQ9BWF2 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 AL355306.1-201ENST00000415580 579 ntBASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 CYMP-203ENST00000474680 1263 ntBASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 HLA-J-203ENST00000494367 1087 ntBASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 GATB-205ENST00000508611 605 ntTSL 2 BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRAIPQ9BWF2 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 GOLGA6L17P-202ENST00000614358 1398 ntBASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 SLC25A1P3-201ENST00000395415 828 ntBASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 TSEN15P1-201ENST00000423257 515 ntBASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 AC022211.2-201ENST00000585075 2527 ntBASIC18.46■□□□□ 0.55
TRAIPQ9BWF2 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC18.46■□□□□ 0.54
TRAIPQ9BWF2 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 AL139400.1-201ENST00000366220 510 ntBASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 HMGA1P7-201ENST00000406908 502 ntBASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRAIPQ9BWF2 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms