Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDX2Q99626 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDX2Q99626 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CDX2Q99626 DEK-201ENST00000244776 1441 ntTSL 2 BASIC17.38■□□□□ 0.37
CDX2Q99626 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX2Q99626 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
CDX2Q99626 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CDX2Q99626 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX2Q99626 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC17.37■□□□□ 0.37
CDX2Q99626 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.37■□□□□ 0.37
CDX2Q99626 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CDX2Q99626 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX2Q99626 ZBTB12BP-201ENST00000314232 1122 ntBASIC17.37■□□□□ 0.37
CDX2Q99626 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX2Q99626 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX2Q99626 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC17.37■□□□□ 0.37
CDX2Q99626 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC17.37■□□□□ 0.37
CDX2Q99626 RPL28-203ENST00000428193 573 ntTSL 2 BASIC17.37■□□□□ 0.37
CDX2Q99626 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CDX2Q99626 EIF4HP1-201ENST00000453115 687 ntBASIC17.37■□□□□ 0.37
CDX2Q99626 HNRNPA1P13-201ENST00000510646 963 ntBASIC17.37■□□□□ 0.37
CDX2Q99626 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC17.37■□□□□ 0.37
CDX2Q99626 HNRNPUP1-201ENST00000554987 333 ntBASIC17.37■□□□□ 0.37
CDX2Q99626 RPL28-207ENST00000558815 616 ntTSL 2 BASIC17.37■□□□□ 0.37
CDX2Q99626 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CDX2Q99626 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC17.37■□□□□ 0.37
CDX2Q99626 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC17.37■□□□□ 0.37
CDX2Q99626 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC17.37■□□□□ 0.37
CDX2Q99626 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
CDX2Q99626 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX2Q99626 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX2Q99626 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX2Q99626 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX2Q99626 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.37■□□□□ 0.37
CDX2Q99626 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC17.37■□□□□ 0.37
CDX2Q99626 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX2Q99626 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX2Q99626 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX2Q99626 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
CDX2Q99626 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDX2Q99626 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
CDX2Q99626 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDX2Q99626 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CDX2Q99626 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDX2Q99626 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
CDX2Q99626 AFG3L1P-217ENST00000557444 2447 ntBASIC17.36■□□□□ 0.37
CDX2Q99626 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.36■□□□□ 0.37
CDX2Q99626 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDX2Q99626 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDX2Q99626 MIR326-201ENST00000362220 95 ntBASIC17.36■□□□□ 0.37
CDX2Q99626 APOA1-205ENST00000375329 927 ntTSL 2 BASIC17.36■□□□□ 0.37
CDX2Q99626 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDX2Q99626 AL662890.1-201ENST00000396818 632 ntBASIC17.36■□□□□ 0.37
CDX2Q99626 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC17.36■□□□□ 0.37
CDX2Q99626 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC17.36■□□□□ 0.37
CDX2Q99626 OARD1-212ENST00000482515 832 ntTSL 2 BASIC17.36■□□□□ 0.37
CDX2Q99626 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC17.36■□□□□ 0.37
CDX2Q99626 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC17.36■□□□□ 0.37
CDX2Q99626 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDX2Q99626 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC17.36■□□□□ 0.37
CDX2Q99626 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC17.36■□□□□ 0.37
CDX2Q99626 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC17.36■□□□□ 0.37
CDX2Q99626 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.36■□□□□ 0.37
CDX2Q99626 AC244452.3-201ENST00000636814 210 ntBASIC17.36■□□□□ 0.37
CDX2Q99626 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDX2Q99626 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDX2Q99626 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC17.36■□□□□ 0.37
CDX2Q99626 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.36■□□□□ 0.37
CDX2Q99626 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
CDX2Q99626 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDX2Q99626 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CDX2Q99626 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC17.36■□□□□ 0.37
CDX2Q99626 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CDX2Q99626 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CDX2Q99626 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDX2Q99626 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.35■□□□□ 0.37
CDX2Q99626 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.35■□□□□ 0.37
CDX2Q99626 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CDX2Q99626 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDX2Q99626 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDX2Q99626 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDX2Q99626 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDX2Q99626 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDX2Q99626 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDX2Q99626 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDX2Q99626 MPV17-206ENST00000402722 827 ntTSL 3 BASIC17.35■□□□□ 0.37
CDX2Q99626 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC17.35■□□□□ 0.37
CDX2Q99626 AKR7A2P1-201ENST00000460134 915 ntBASIC17.35■□□□□ 0.37
CDX2Q99626 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC17.35■□□□□ 0.37
CDX2Q99626 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDX2Q99626 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDX2Q99626 AC079316.1-201ENST00000548397 411 ntBASIC17.35■□□□□ 0.37
CDX2Q99626 AC133539.2-201ENST00000604757 467 ntBASIC17.35■□□□□ 0.37
CDX2Q99626 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
CDX2Q99626 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC17.35■□□□□ 0.37
CDX2Q99626 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDX2Q99626 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CDX2Q99626 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CDX2Q99626 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CDX2Q99626 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms