Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SNRNP40Q96DI7 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SNRNP40Q96DI7 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SNRNP40Q96DI7 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
SNRNP40Q96DI7 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SNRNP40Q96DI7 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
SNRNP40Q96DI7 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC15.12■□□□□ 0.01
SNRNP40Q96DI7 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SNRNP40Q96DI7 AC131009.4-201ENST00000624048 1740 ntBASIC15.12■□□□□ 0.01
SNRNP40Q96DI7 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 HARS-204ENST00000438307 1789 ntTSL 2 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 OR6D1P-202ENST00000641007 5290 ntBASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 AC142381.1-201ENST00000426099 345 ntBASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 SPTLC1P1-201ENST00000447199 261 ntBASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 LY6E-204ENST00000519546 971 ntTSL 2 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 AC105233.2-201ENST00000523697 349 ntBASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 AF228730.5-201ENST00000530288 346 ntBASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SNRNP40Q96DI7 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 CALY-202ENST00000368555 783 ntTSL 2 BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 KRT17P7-201ENST00000451704 1104 ntBASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 NAA50-208ENST00000497255 789 ntTSL 5 BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 AC007967.4-201ENST00000614700 386 ntBASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 BICD1-207ENST00000551848 1962 ntBASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 AC012317.2-201ENST00000623305 2251 ntBASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 NME9-203ENST00000383180 2133 ntTSL 2 BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
SNRNP40Q96DI7 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC15.09■□□□□ 0.01
SNRNP40Q96DI7 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms