Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
PPP4R4Q6NUP7 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PPP4R4Q6NUP7 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.27■□□□□ 0.19
PPP4R4Q6NUP7 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 AL365203.3-201ENST00000609742 2057 ntBASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 TSPY12P-201ENST00000421279 868 ntBASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 LINC00265-3P-201ENST00000447588 903 ntBASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 KRT18P56-201ENST00000507275 550 ntBASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 AL390719.2-201ENST00000606993 987 ntBASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 AL139327.4-201ENST00000612362 153 ntBASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 AC124864.1-201ENST00000623408 392 ntBASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 AC016734.2-201ENST00000624325 1377 ntBASIC16.26■□□□□ 0.19
PPP4R4Q6NUP7 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 BX276092.7-203ENST00000637198 1536 ntBASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 AP000867.3-201ENST00000524675 377 ntBASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 AC092329.2-201ENST00000598402 547 ntBASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
PPP4R4Q6NUP7 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PPP4R4Q6NUP7 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PPP4R4Q6NUP7 AC092850.2-201ENST00000623821 2697 ntBASIC16.24■□□□□ 0.19
PPP4R4Q6NUP7 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PPP4R4Q6NUP7 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PPP4R4Q6NUP7 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PPP4R4Q6NUP7 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PPP4R4Q6NUP7 PAUPAR-201ENST00000630360 2965 ntBASIC16.24■□□□□ 0.19
PPP4R4Q6NUP7 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
PPP4R4Q6NUP7 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PPP4R4Q6NUP7 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PPP4R4Q6NUP7 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PPP4R4Q6NUP7 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PPP4R4Q6NUP7 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.24■□□□□ 0.19
PPP4R4Q6NUP7 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.24■□□□□ 0.19
PPP4R4Q6NUP7 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms