Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.17■□□□□ 0.18
VSX2P58304 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.17■□□□□ 0.18
VSX2P58304 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
VSX2P58304 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.17■□□□□ 0.18
VSX2P58304 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.17■□□□□ 0.18
VSX2P58304 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
VSX2P58304 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 YBX2P1-201ENST00000394192 760 ntBASIC16.17■□□□□ 0.18
VSX2P58304 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
VSX2P58304 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.17■□□□□ 0.18
VSX2P58304 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.17■□□□□ 0.18
VSX2P58304 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
VSX2P58304 AC124947.2-201ENST00000547118 1133 ntBASIC16.17■□□□□ 0.18
VSX2P58304 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.17■□□□□ 0.18
VSX2P58304 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.17■□□□□ 0.18
VSX2P58304 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
VSX2P58304 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.17■□□□□ 0.18
VSX2P58304 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
VSX2P58304 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC16.17■□□□□ 0.18
VSX2P58304 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.17■□□□□ 0.18
VSX2P58304 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.17■□□□□ 0.18
VSX2P58304 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
VSX2P58304 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.17■□□□□ 0.18
VSX2P58304 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
VSX2P58304 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
VSX2P58304 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.16■□□□□ 0.18
VSX2P58304 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.16■□□□□ 0.18
VSX2P58304 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
VSX2P58304 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
VSX2P58304 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.16■□□□□ 0.18
VSX2P58304 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.16■□□□□ 0.18
VSX2P58304 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
VSX2P58304 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
VSX2P58304 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
VSX2P58304 AC004832.2-201ENST00000426397 482 ntBASIC16.16■□□□□ 0.18
VSX2P58304 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.16■□□□□ 0.18
VSX2P58304 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
VSX2P58304 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.16■□□□□ 0.18
VSX2P58304 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.16■□□□□ 0.18
VSX2P58304 DUX4L17-201ENST00000557360 1267 ntBASIC16.16■□□□□ 0.18
VSX2P58304 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.16■□□□□ 0.18
VSX2P58304 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.16■□□□□ 0.18
VSX2P58304 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.16■□□□□ 0.18
VSX2P58304 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.16■□□□□ 0.18
VSX2P58304 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.16■□□□□ 0.18
VSX2P58304 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.16■□□□□ 0.18
VSX2P58304 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.16■□□□□ 0.18
VSX2P58304 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
VSX2P58304 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VSX2P58304 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VSX2P58304 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
VSX2P58304 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
VSX2P58304 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.15■□□□□ 0.18
VSX2P58304 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
VSX2P58304 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.15■□□□□ 0.18
VSX2P58304 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
VSX2P58304 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.15■□□□□ 0.18
VSX2P58304 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms