Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
COL4A4P53420 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
COL4A4P53420 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.82■□□□□ 0.44
COL4A4P53420 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.82■□□□□ 0.44
COL4A4P53420 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC17.82■□□□□ 0.44
COL4A4P53420 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A4P53420 HLA-V-204ENST00000476601 1289 ntBASIC17.82■□□□□ 0.44
COL4A4P53420 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A4P53420 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC17.82■□□□□ 0.44
COL4A4P53420 Six3os1_5.1-201ENST00000611000 271 ntBASIC17.82■□□□□ 0.44
COL4A4P53420 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A4P53420 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A4P53420 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A4P53420 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A4P53420 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL4A4P53420 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A4P53420 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.81■□□□□ 0.44
COL4A4P53420 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A4P53420 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
COL4A4P53420 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A4P53420 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A4P53420 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A4P53420 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.81■□□□□ 0.44
COL4A4P53420 PRYP6-201ENST00000514804 343 ntBASIC17.81■□□□□ 0.44
COL4A4P53420 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.81■□□□□ 0.44
COL4A4P53420 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC17.81■□□□□ 0.44
COL4A4P53420 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.81■□□□□ 0.44
COL4A4P53420 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC17.81■□□□□ 0.44
COL4A4P53420 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.81■□□□□ 0.44
COL4A4P53420 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
COL4A4P53420 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
COL4A4P53420 AC060834.1-201ENST00000443027 2032 ntBASIC17.81■□□□□ 0.44
COL4A4P53420 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A4P53420 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A4P53420 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A4P53420 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A4P53420 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.81■□□□□ 0.44
COL4A4P53420 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.81■□□□□ 0.44
COL4A4P53420 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.81■□□□□ 0.44
COL4A4P53420 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC17.81■□□□□ 0.44
COL4A4P53420 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL4A4P53420 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
COL4A4P53420 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A4P53420 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A4P53420 FAM220BP-201ENST00000377689 816 ntBASIC17.8■□□□□ 0.44
COL4A4P53420 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A4P53420 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A4P53420 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.8■□□□□ 0.44
COL4A4P53420 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A4P53420 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC17.8■□□□□ 0.44
COL4A4P53420 MTND6P24-201ENST00000440466 518 ntBASIC17.8■□□□□ 0.44
COL4A4P53420 TTTY23B-201ENST00000442790 549 ntBASIC17.8■□□□□ 0.44
COL4A4P53420 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC17.8■□□□□ 0.44
COL4A4P53420 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
COL4A4P53420 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A4P53420 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A4P53420 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.8■□□□□ 0.44
COL4A4P53420 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.8■□□□□ 0.44
COL4A4P53420 AC091167.2-201ENST00000579581 588 ntBASIC17.8■□□□□ 0.44
COL4A4P53420 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
COL4A4P53420 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
COL4A4P53420 AC073389.1-201ENST00000595595 795 ntBASIC17.8■□□□□ 0.44
COL4A4P53420 AC008494.3-201ENST00000606615 944 ntBASIC17.8■□□□□ 0.44
COL4A4P53420 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC17.8■□□□□ 0.44
COL4A4P53420 LINC00895-201ENST00000629028 1637 ntBASIC17.8■□□□□ 0.44
COL4A4P53420 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A4P53420 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
COL4A4P53420 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
COL4A4P53420 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A4P53420 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A4P53420 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A4P53420 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A4P53420 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A4P53420 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
COL4A4P53420 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A4P53420 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.8■□□□□ 0.44
COL4A4P53420 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.8■□□□□ 0.44
COL4A4P53420 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
COL4A4P53420 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A4P53420 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A4P53420 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A4P53420 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.8■□□□□ 0.44
COL4A4P53420 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC17.8■□□□□ 0.44
COL4A4P53420 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A4P53420 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A4P53420 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A4P53420 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A4P53420 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A4P53420 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.8■□□□□ 0.44
COL4A4P53420 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC17.8■□□□□ 0.44
COL4A4P53420 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A4P53420 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A4P53420 AC009407.1-201ENST00000568958 598 ntBASIC17.8■□□□□ 0.44
COL4A4P53420 MIR4525-201ENST00000580000 75 ntBASIC17.8■□□□□ 0.44
COL4A4P53420 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL4A4P53420 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
COL4A4P53420 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A4P53420 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL4A4P53420 MXI1-205ENST00000393134 889 ntTSL 2 BASIC17.79■□□□□ 0.44
COL4A4P53420 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms