Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LHX1P48742 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
LHX1P48742 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LHX1P48742 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
LHX1P48742 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LHX1P48742 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.83■□□□□ 0.44
LHX1P48742 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
LHX1P48742 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
LHX1P48742 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LHX1P48742 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LHX1P48742 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
LHX1P48742 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.83■□□□□ 0.44
LHX1P48742 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.83■□□□□ 0.44
LHX1P48742 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC17.83■□□□□ 0.44
LHX1P48742 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
LHX1P48742 CNN2P11-201ENST00000429351 262 ntBASIC17.83■□□□□ 0.44
LHX1P48742 ADH5P3-201ENST00000433842 1137 ntBASIC17.83■□□□□ 0.44
LHX1P48742 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.83■□□□□ 0.44
LHX1P48742 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.83■□□□□ 0.44
LHX1P48742 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
LHX1P48742 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
LHX1P48742 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
LHX1P48742 AC021097.1-201ENST00000607902 574 ntBASIC17.83■□□□□ 0.44
LHX1P48742 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LHX1P48742 AL596442.2-201ENST00000610240 980 ntBASIC17.83■□□□□ 0.44
LHX1P48742 AC026120.1-201ENST00000611536 926 ntBASIC17.83■□□□□ 0.44
LHX1P48742 AC105339.1-204ENST00000636249 355 ntBASIC17.83■□□□□ 0.44
LHX1P48742 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.83■□□□□ 0.44
LHX1P48742 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.83■□□□□ 0.44
LHX1P48742 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LHX1P48742 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LHX1P48742 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.44
LHX1P48742 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LHX1P48742 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LHX1P48742 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.82■□□□□ 0.44
LHX1P48742 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LHX1P48742 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LHX1P48742 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LHX1P48742 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.82■□□□□ 0.44
LHX1P48742 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.82■□□□□ 0.44
LHX1P48742 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LHX1P48742 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LHX1P48742 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
LHX1P48742 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
LHX1P48742 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LHX1P48742 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
LHX1P48742 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.82■□□□□ 0.44
LHX1P48742 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LHX1P48742 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LHX1P48742 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
LHX1P48742 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.82■□□□□ 0.44
LHX1P48742 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LHX1P48742 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LHX1P48742 TFAMP1-201ENST00000412727 736 ntBASIC17.82■□□□□ 0.44
LHX1P48742 RN7SL589P-201ENST00000481268 310 ntBASIC17.82■□□□□ 0.44
LHX1P48742 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC17.82■□□□□ 0.44
LHX1P48742 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LHX1P48742 AL513210.1-201ENST00000629608 234 ntBASIC17.82■□□□□ 0.44
LHX1P48742 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC17.82■□□□□ 0.44
LHX1P48742 AL139011.1-202ENST00000642063 584 ntBASIC17.82■□□□□ 0.44
LHX1P48742 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LHX1P48742 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.82■□□□□ 0.44
LHX1P48742 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LHX1P48742 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LHX1P48742 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LHX1P48742 AL391256.1-201ENST00000443260 1855 ntBASIC17.82■□□□□ 0.44
LHX1P48742 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LHX1P48742 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LHX1P48742 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
LHX1P48742 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
LHX1P48742 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LHX1P48742 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
LHX1P48742 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LHX1P48742 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.81■□□□□ 0.44
LHX1P48742 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LHX1P48742 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LHX1P48742 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LHX1P48742 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LHX1P48742 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LHX1P48742 SPDYE11-202ENST00000450699 704 ntBASIC17.81■□□□□ 0.44
LHX1P48742 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
LHX1P48742 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.81■□□□□ 0.44
LHX1P48742 AC092183.1-201ENST00000469884 875 ntBASIC17.81■□□□□ 0.44
LHX1P48742 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.81■□□□□ 0.44
LHX1P48742 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC17.81■□□□□ 0.44
LHX1P48742 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
LHX1P48742 SPDYE9P-201ENST00000570642 692 ntBASIC17.81■□□□□ 0.44
LHX1P48742 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC17.81■□□□□ 0.44
LHX1P48742 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.81■□□□□ 0.44
LHX1P48742 SPDYE10P-202ENST00000612005 668 ntBASIC17.81■□□□□ 0.44
LHX1P48742 SPDYE8P-202ENST00000612377 668 ntBASIC17.81■□□□□ 0.44
LHX1P48742 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LHX1P48742 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
LHX1P48742 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
LHX1P48742 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LHX1P48742 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
LHX1P48742 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.81■□□□□ 0.44
LHX1P48742 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LHX1P48742 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LHX1P48742 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms