Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A2P12110 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.73■□□□□ 0.27
COL6A2P12110 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A2P12110 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A2P12110 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL6A2P12110 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
COL6A2P12110 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A2P12110 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.72■□□□□ 0.27
COL6A2P12110 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A2P12110 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
COL6A2P12110 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A2P12110 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A2P12110 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.72■□□□□ 0.27
COL6A2P12110 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A2P12110 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A2P12110 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
COL6A2P12110 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
COL6A2P12110 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
COL6A2P12110 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A2P12110 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.72■□□□□ 0.27
COL6A2P12110 KRT16P4-201ENST00000453883 522 ntBASIC16.72■□□□□ 0.27
COL6A2P12110 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.72■□□□□ 0.27
COL6A2P12110 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.72■□□□□ 0.27
COL6A2P12110 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A2P12110 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
COL6A2P12110 NPAP1P7-201ENST00000613027 823 ntBASIC16.72■□□□□ 0.27
COL6A2P12110 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A2P12110 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.72■□□□□ 0.27
COL6A2P12110 AL590326.2-201ENST00000625139 305 ntBASIC16.72■□□□□ 0.27
COL6A2P12110 AP000550.4-202ENST00000639755 178 ntBASIC16.72■□□□□ 0.27
COL6A2P12110 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.72■□□□□ 0.27
COL6A2P12110 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A2P12110 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
COL6A2P12110 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A2P12110 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A2P12110 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A2P12110 AL136379.1-201ENST00000623471 2642 ntBASIC16.72■□□□□ 0.27
COL6A2P12110 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.72■□□□□ 0.27
COL6A2P12110 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A2P12110 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.72■□□□□ 0.27
COL6A2P12110 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A2P12110 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
COL6A2P12110 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.72■□□□□ 0.27
COL6A2P12110 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A2P12110 AL662844.4-201ENST00000606367 2838 ntBASIC16.72■□□□□ 0.27
COL6A2P12110 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.72■□□□□ 0.27
COL6A2P12110 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL6A2P12110 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.72■□□□□ 0.27
COL6A2P12110 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A2P12110 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
COL6A2P12110 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.71■□□□□ 0.27
COL6A2P12110 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A2P12110 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
COL6A2P12110 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A2P12110 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A2P12110 NCF1C-201ENST00000438382 1427 ntBASIC16.71■□□□□ 0.27
COL6A2P12110 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A2P12110 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
COL6A2P12110 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
COL6A2P12110 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A2P12110 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A2P12110 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A2P12110 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A2P12110 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.71■□□□□ 0.27
COL6A2P12110 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A2P12110 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A2P12110 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.71■□□□□ 0.27
COL6A2P12110 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC16.71■□□□□ 0.27
COL6A2P12110 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.71■□□□□ 0.27
COL6A2P12110 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.71■□□□□ 0.27
COL6A2P12110 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.71■□□□□ 0.27
COL6A2P12110 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
COL6A2P12110 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
COL6A2P12110 AC099336.1-202ENST00000602961 463 ntBASIC16.71■□□□□ 0.27
COL6A2P12110 AL591684.3-201ENST00000605187 298 ntBASIC16.71■□□□□ 0.27
COL6A2P12110 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A2P12110 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.71■□□□□ 0.27
COL6A2P12110 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.71■□□□□ 0.27
COL6A2P12110 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A2P12110 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A2P12110 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A2P12110 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
COL6A2P12110 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A2P12110 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A2P12110 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.71■□□□□ 0.27
COL6A2P12110 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.71■□□□□ 0.27
COL6A2P12110 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A2P12110 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL6A2P12110 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
COL6A2P12110 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.71■□□□□ 0.26
COL6A2P12110 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
COL6A2P12110 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.7■□□□□ 0.26
COL6A2P12110 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.7■□□□□ 0.26
COL6A2P12110 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.7■□□□□ 0.26
COL6A2P12110 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.7■□□□□ 0.26
COL6A2P12110 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.7■□□□□ 0.26
COL6A2P12110 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A2P12110 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A2P12110 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A2P12110 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms