Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
FREM3P0C091 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
FREM3P0C091 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.32■□□□□ 0.04
FREM3P0C091 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
FREM3P0C091 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
FREM3P0C091 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
FREM3P0C091 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
FREM3P0C091 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FREM3P0C091 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
FREM3P0C091 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.31■□□□□ 0.04
FREM3P0C091 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FREM3P0C091 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FREM3P0C091 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FREM3P0C091 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FREM3P0C091 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
FREM3P0C091 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
FREM3P0C091 AC004967.1-201ENST00000453589 447 ntBASIC15.31■□□□□ 0.04
FREM3P0C091 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.31■□□□□ 0.04
FREM3P0C091 RPL28-209ENST00000560055 670 ntTSL 3 BASIC15.31■□□□□ 0.04
FREM3P0C091 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC15.31■□□□□ 0.04
FREM3P0C091 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
FREM3P0C091 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
FREM3P0C091 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.31■□□□□ 0.04
FREM3P0C091 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.31■□□□□ 0.04
FREM3P0C091 AL021920.2-201ENST00000624828 1351 ntBASIC15.31■□□□□ 0.04
FREM3P0C091 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
FREM3P0C091 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
FREM3P0C091 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.31■□□□□ 0.04
FREM3P0C091 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
FREM3P0C091 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
FREM3P0C091 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.31■□□□□ 0.04
FREM3P0C091 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.31■□□□□ 0.04
FREM3P0C091 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
FREM3P0C091 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FREM3P0C091 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
FREM3P0C091 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FREM3P0C091 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
FREM3P0C091 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
FREM3P0C091 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FREM3P0C091 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
FREM3P0C091 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.31■□□□□ 0.04
FREM3P0C091 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FREM3P0C091 HMGA1P7-201ENST00000406908 502 ntBASIC15.31■□□□□ 0.04
FREM3P0C091 PMS2P2-201ENST00000425039 1128 ntBASIC15.31■□□□□ 0.04
FREM3P0C091 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.31■□□□□ 0.04
FREM3P0C091 AC124947.2-201ENST00000547118 1133 ntBASIC15.31■□□□□ 0.04
FREM3P0C091 DUX4L17-201ENST00000557360 1267 ntBASIC15.31■□□□□ 0.04
FREM3P0C091 AC096734.2-201ENST00000562054 433 ntBASIC15.31■□□□□ 0.04
FREM3P0C091 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.31■□□□□ 0.04
FREM3P0C091 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
FREM3P0C091 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.31■□□□□ 0.04
FREM3P0C091 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FREM3P0C091 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
FREM3P0C091 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
FREM3P0C091 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.31■□□□□ 0.04
FREM3P0C091 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC15.3■□□□□ 0.04
FREM3P0C091 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.3■□□□□ 0.04
FREM3P0C091 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC15.3■□□□□ 0.04
FREM3P0C091 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.3■□□□□ 0.04
FREM3P0C091 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
FREM3P0C091 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.3■□□□□ 0.04
FREM3P0C091 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC15.3■□□□□ 0.04
FREM3P0C091 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
FREM3P0C091 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 METTL21AP1-201ENST00000438852 635 ntBASIC15.3■□□□□ 0.04
FREM3P0C091 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
FREM3P0C091 SLC22A20-204ENST00000530038 1673 ntBASIC15.3■□□□□ 0.04
FREM3P0C091 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.3■□□□□ 0.04
FREM3P0C091 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.3■□□□□ 0.04
FREM3P0C091 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC15.3■□□□□ 0.04
FREM3P0C091 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC15.3■□□□□ 0.04
FREM3P0C091 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.3■□□□□ 0.04
FREM3P0C091 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC15.3■□□□□ 0.04
FREM3P0C091 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
FREM3P0C091 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.3■□□□□ 0.04
FREM3P0C091 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
FREM3P0C091 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
FREM3P0C091 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
FREM3P0C091 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.29■□□□□ 0.04
FREM3P0C091 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms