Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC13.15□□□□□ -0.3
CXCL1P09341 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC13.15□□□□□ -0.3
CXCL1P09341 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CXCL1P09341 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
CXCL1P09341 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CXCL1P09341 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
CXCL1P09341 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
CXCL1P09341 AP005117.1-202ENST00000581724 1908 ntBASIC13.15□□□□□ -0.3
CXCL1P09341 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC13.15□□□□□ -0.3
CXCL1P09341 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CXCL1P09341 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CXCL1P09341 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CXCL1P09341 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CXCL1P09341 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
CXCL1P09341 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.14□□□□□ -0.31
CXCL1P09341 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 AL596087.1-201ENST00000400979 1969 ntBASIC13.14□□□□□ -0.31
CXCL1P09341 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
CXCL1P09341 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CXCL1P09341 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
CXCL1P09341 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.14□□□□□ -0.31
CXCL1P09341 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC13.14□□□□□ -0.31
CXCL1P09341 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CXCL1P09341 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CXCL1P09341 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC13.14□□□□□ -0.31
CXCL1P09341 RPPH1-201ENST00000516869 333 ntBASIC13.14□□□□□ -0.31
CXCL1P09341 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC13.14□□□□□ -0.31
CXCL1P09341 KRT18P6-201ENST00000555540 1265 ntBASIC13.14□□□□□ -0.31
CXCL1P09341 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
CXCL1P09341 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC13.14□□□□□ -0.31
CXCL1P09341 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CXCL1P09341 AC010240.3-201ENST00000607688 395 ntBASIC13.14□□□□□ -0.31
CXCL1P09341 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CXCL1P09341 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC13.14□□□□□ -0.31
CXCL1P09341 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC13.14□□□□□ -0.31
CXCL1P09341 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC13.14□□□□□ -0.31
CXCL1P09341 AL391256.1-201ENST00000443260 1855 ntBASIC13.14□□□□□ -0.31
CXCL1P09341 ME2P1-201ENST00000426028 1970 ntBASIC13.14□□□□□ -0.31
CXCL1P09341 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
CXCL1P09341 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CXCL1P09341 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
CXCL1P09341 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC13.13□□□□□ -0.31
CXCL1P09341 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 LCK-206ENST00000373564 2137 ntTSL 5 BASIC13.13□□□□□ -0.31
CXCL1P09341 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC13.13□□□□□ -0.31
CXCL1P09341 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
CXCL1P09341 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC13.13□□□□□ -0.31
CXCL1P09341 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CXCL1P09341 POLL-217ENST00000628479 1953 ntTSL 5 BASIC13.13□□□□□ -0.31
CXCL1P09341 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
CXCL1P09341 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CXCL1P09341 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC13.13□□□□□ -0.31
CXCL1P09341 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 AC128676.1-201ENST00000454392 318 ntBASIC13.13□□□□□ -0.31
CXCL1P09341 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC13.13□□□□□ -0.31
CXCL1P09341 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC13.13□□□□□ -0.31
CXCL1P09341 AC124947.2-201ENST00000547118 1133 ntBASIC13.13□□□□□ -0.31
CXCL1P09341 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC13.13□□□□□ -0.31
CXCL1P09341 EMC9-206ENST00000560403 872 ntTSL 2 BASIC13.13□□□□□ -0.31
CXCL1P09341 AL353719.1-201ENST00000566847 864 ntBASIC13.13□□□□□ -0.31
CXCL1P09341 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CXCL1P09341 AL023803.3-201ENST00000615559 522 ntBASIC13.13□□□□□ -0.31
CXCL1P09341 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CXCL1P09341 TBCB-214ENST00000629269 413 ntTSL 5 BASIC13.13□□□□□ -0.31
CXCL1P09341 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
CXCL1P09341 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms