Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 HLA-V-204ENST00000476601 1289 ntBASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SHROOM4Q9ULL8 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC31.83■■■□□ 2.69
SHROOM4Q9ULL8 GRAMD4P3-201ENST00000621665 1669 ntBASIC31.83■■■□□ 2.69
SHROOM4Q9ULL8 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC31.83■■■□□ 2.69
SHROOM4Q9ULL8 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SHROOM4Q9ULL8 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SHROOM4Q9ULL8 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC31.83■■■□□ 2.69
SHROOM4Q9ULL8 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SHROOM4Q9ULL8 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC31.83■■■□□ 2.69
SHROOM4Q9ULL8 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SHROOM4Q9ULL8 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC31.83■■■□□ 2.69
SHROOM4Q9ULL8 FRMD8P1-201ENST00000440433 1524 ntBASIC31.83■■■□□ 2.69
SHROOM4Q9ULL8 AC012569.1-201ENST00000591191 1524 ntBASIC31.83■■■□□ 2.69
SHROOM4Q9ULL8 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC31.83■■■□□ 2.69
SHROOM4Q9ULL8 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC31.83■■■□□ 2.69
SHROOM4Q9ULL8 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC31.83■■■□□ 2.69
SHROOM4Q9ULL8 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC31.82■■■□□ 2.69
SHROOM4Q9ULL8 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC31.82■■■□□ 2.69
SHROOM4Q9ULL8 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.69
SHROOM4Q9ULL8 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.69
SHROOM4Q9ULL8 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC31.82■■■□□ 2.69
SHROOM4Q9ULL8 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC31.82■■■□□ 2.68
SHROOM4Q9ULL8 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
SHROOM4Q9ULL8 NOC2LP2-201ENST00000407594 1944 ntBASIC31.82■■■□□ 2.68
SHROOM4Q9ULL8 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC31.82■■■□□ 2.68
SHROOM4Q9ULL8 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
SHROOM4Q9ULL8 SATB1-217ENST00000493952 626 ntTSL 3 BASIC31.82■■■□□ 2.68
SHROOM4Q9ULL8 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC31.82■■■□□ 2.68
SHROOM4Q9ULL8 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC31.82■■■□□ 2.68
SHROOM4Q9ULL8 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
SHROOM4Q9ULL8 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC31.82■■■□□ 2.68
SHROOM4Q9ULL8 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
SHROOM4Q9ULL8 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC31.82■■■□□ 2.68
SHROOM4Q9ULL8 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
SHROOM4Q9ULL8 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
SHROOM4Q9ULL8 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC31.82■■■□□ 2.68
SHROOM4Q9ULL8 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC31.82■■■□□ 2.68
SHROOM4Q9ULL8 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
SHROOM4Q9ULL8 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC31.81■■■□□ 2.68
SHROOM4Q9ULL8 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
SHROOM4Q9ULL8 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
SHROOM4Q9ULL8 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
SHROOM4Q9ULL8 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
SHROOM4Q9ULL8 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
SHROOM4Q9ULL8 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC31.81■■■□□ 2.68
SHROOM4Q9ULL8 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
SHROOM4Q9ULL8 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 AL138688.1-201ENST00000624851 1594 ntBASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC31.8■■■□□ 2.68
SHROOM4Q9ULL8 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
SHROOM4Q9ULL8 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC31.79■■■□□ 2.68
SHROOM4Q9ULL8 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
SHROOM4Q9ULL8 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC31.79■■■□□ 2.68
SHROOM4Q9ULL8 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC31.79■■■□□ 2.68
SHROOM4Q9ULL8 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC31.79■■■□□ 2.68
SHROOM4Q9ULL8 SSH2-210ENST00000582084 560 ntTSL 3 BASIC31.79■■■□□ 2.68
SHROOM4Q9ULL8 Six3os1_5.1-201ENST00000611000 271 ntBASIC31.79■■■□□ 2.68
SHROOM4Q9ULL8 AL138828.2-201ENST00000615812 383 ntBASIC31.79■■■□□ 2.68
SHROOM4Q9ULL8 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC31.79■■■□□ 2.68
SHROOM4Q9ULL8 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC31.79■■■□□ 2.68
SHROOM4Q9ULL8 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
SHROOM4Q9ULL8 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC31.79■■■□□ 2.68
SHROOM4Q9ULL8 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
SHROOM4Q9ULL8 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
SHROOM4Q9ULL8 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
SHROOM4Q9ULL8 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
SHROOM4Q9ULL8 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC31.78■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms