Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SIX4Q9UIU6 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
SIX4Q9UIU6 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SIX4Q9UIU6 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
SIX4Q9UIU6 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC18.02■□□□□ 0.47
SIX4Q9UIU6 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 CDK2AP2P3-201ENST00000422476 372 ntBASIC18.01■□□□□ 0.47
SIX4Q9UIU6 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 MKNK2P1-201ENST00000437526 628 ntBASIC18.01■□□□□ 0.47
SIX4Q9UIU6 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 AC109635.5-201ENST00000533593 962 ntBASIC18.01■□□□□ 0.47
SIX4Q9UIU6 AC005829.1-201ENST00000570002 483 ntBASIC18.01■□□□□ 0.47
SIX4Q9UIU6 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 PCDHA12-202ENST00000613593 2588 ntBASIC18.01■□□□□ 0.47
SIX4Q9UIU6 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 AD000864.1-201ENST00000624076 2295 ntBASIC18.01■□□□□ 0.47
SIX4Q9UIU6 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
SIX4Q9UIU6 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC18■□□□□ 0.47
SIX4Q9UIU6 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SIX4Q9UIU6 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 KRT8P39-201ENST00000396270 1433 ntBASIC18■□□□□ 0.47
SIX4Q9UIU6 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SIX4Q9UIU6 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 CD82-202ENST00000342935 967 ntTSL 5 BASIC18■□□□□ 0.47
SIX4Q9UIU6 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
SIX4Q9UIU6 AC092474.2-201ENST00000424288 719 ntBASIC18■□□□□ 0.47
SIX4Q9UIU6 ADH5P3-201ENST00000433842 1137 ntBASIC18■□□□□ 0.47
SIX4Q9UIU6 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18■□□□□ 0.47
SIX4Q9UIU6 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18■□□□□ 0.47
SIX4Q9UIU6 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18■□□□□ 0.47
SIX4Q9UIU6 MIR3687-2-201ENST00000577708 61 ntBASIC18■□□□□ 0.47
SIX4Q9UIU6 MIR3909-201ENST00000579518 119 ntBASIC18■□□□□ 0.47
SIX4Q9UIU6 MIR4469-201ENST00000583919 79 ntBASIC18■□□□□ 0.47
SIX4Q9UIU6 MIR3687-1-201ENST00000614492 61 ntBASIC18■□□□□ 0.47
SIX4Q9UIU6 AC139530.3-201ENST00000620344 690 ntBASIC18■□□□□ 0.47
SIX4Q9UIU6 AL139011.1-202ENST00000642063 584 ntBASIC18■□□□□ 0.47
SIX4Q9UIU6 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
SIX4Q9UIU6 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18■□□□□ 0.47
SIX4Q9UIU6 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC18■□□□□ 0.47
SIX4Q9UIU6 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC18■□□□□ 0.47
SIX4Q9UIU6 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC18■□□□□ 0.47
SIX4Q9UIU6 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC18■□□□□ 0.47
SIX4Q9UIU6 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC18■□□□□ 0.47
SIX4Q9UIU6 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC18■□□□□ 0.47
SIX4Q9UIU6 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 AC002056.1-201ENST00000395613 760 ntBASIC17.99■□□□□ 0.47
SIX4Q9UIU6 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC17.99■□□□□ 0.47
SIX4Q9UIU6 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms