Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 FAM86EP-206ENST00000510506 987 ntBASIC14.83□□□□□ -0.04
NKX3-1Q99801 GUSBP12-201ENST00000513727 720 ntBASIC14.83□□□□□ -0.04
NKX3-1Q99801 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC14.83□□□□□ -0.04
NKX3-1Q99801 LY6E-213ENST00000522528 606 ntTSL 3 BASIC14.83□□□□□ -0.04
NKX3-1Q99801 AL138831.2-201ENST00000606564 490 ntBASIC14.83□□□□□ -0.04
NKX3-1Q99801 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
NKX3-1Q99801 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.83□□□□□ -0.04
NKX3-1Q99801 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
NKX3-1Q99801 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC14.83□□□□□ -0.04
NKX3-1Q99801 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
NKX3-1Q99801 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 AL645728.1-201ENST00000366221 2101 ntBASIC14.83□□□□□ -0.04
NKX3-1Q99801 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC14.83□□□□□ -0.04
NKX3-1Q99801 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
NKX3-1Q99801 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
NKX3-1Q99801 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
NKX3-1Q99801 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NKX3-1Q99801 AP002414.2-201ENST00000591780 3365 ntBASIC14.82□□□□□ -0.04
NKX3-1Q99801 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
NKX3-1Q99801 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NKX3-1Q99801 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NKX3-1Q99801 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NKX3-1Q99801 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NKX3-1Q99801 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
NKX3-1Q99801 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
NKX3-1Q99801 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC14.82□□□□□ -0.04
NKX3-1Q99801 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
NKX3-1Q99801 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
NKX3-1Q99801 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NKX3-1Q99801 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NKX3-1Q99801 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NKX3-1Q99801 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
NKX3-1Q99801 STK25P1-201ENST00000585406 838 ntBASIC14.82□□□□□ -0.04
NKX3-1Q99801 METTL23-204ENST00000586752 904 ntTSL 2 BASIC14.82□□□□□ -0.04
NKX3-1Q99801 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC14.82□□□□□ -0.04
NKX3-1Q99801 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC14.82□□□□□ -0.04
NKX3-1Q99801 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC14.82□□□□□ -0.04
NKX3-1Q99801 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NKX3-1Q99801 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NKX3-1Q99801 AC005332.1-201ENST00000577698 1310 ntBASIC14.82□□□□□ -0.04
NKX3-1Q99801 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NKX3-1Q99801 FRMD6-AS1-201ENST00000617151 2229 ntBASIC14.82□□□□□ -0.04
NKX3-1Q99801 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
NKX3-1Q99801 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.82□□□□□ -0.04
NKX3-1Q99801 BANP-204ENST00000393208 2283 ntTSL 2 BASIC14.82□□□□□ -0.04
NKX3-1Q99801 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
NKX3-1Q99801 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
NKX3-1Q99801 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NKX3-1Q99801 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC14.82□□□□□ -0.04
NKX3-1Q99801 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NKX3-1Q99801 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
NKX3-1Q99801 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NKX3-1Q99801 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
NKX3-1Q99801 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC14.82□□□□□ -0.04
NKX3-1Q99801 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC14.82□□□□□ -0.04
NKX3-1Q99801 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.81□□□□□ -0.04
NKX3-1Q99801 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.81□□□□□ -0.04
NKX3-1Q99801 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
NKX3-1Q99801 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NKX3-1Q99801 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC14.81□□□□□ -0.04
NKX3-1Q99801 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
NKX3-1Q99801 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
NKX3-1Q99801 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NKX3-1Q99801 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.81□□□□□ -0.04
NKX3-1Q99801 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC14.81□□□□□ -0.04
NKX3-1Q99801 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
NKX3-1Q99801 HLA-A-202ENST00000376806 1854 ntBASIC14.81□□□□□ -0.04
NKX3-1Q99801 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NKX3-1Q99801 MEG3-211ENST00000452514 461 ntTSL 3 BASIC14.81□□□□□ -0.04
NKX3-1Q99801 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC14.81□□□□□ -0.04
NKX3-1Q99801 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC14.81□□□□□ -0.04
NKX3-1Q99801 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC14.81□□□□□ -0.04
NKX3-1Q99801 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC14.81□□□□□ -0.04
NKX3-1Q99801 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC14.81□□□□□ -0.04
NKX3-1Q99801 IGHV3-41-201ENST00000613121 348 ntBASIC14.81□□□□□ -0.04
NKX3-1Q99801 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC14.81□□□□□ -0.04
NKX3-1Q99801 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC14.81□□□□□ -0.04
NKX3-1Q99801 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC14.81□□□□□ -0.04
NKX3-1Q99801 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NKX3-1Q99801 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC14.81□□□□□ -0.04
NKX3-1Q99801 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NKX3-1Q99801 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NKX3-1Q99801 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
NKX3-1Q99801 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC14.81□□□□□ -0.04
NKX3-1Q99801 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NKX3-1Q99801 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
NKX3-1Q99801 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
NKX3-1Q99801 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
NKX3-1Q99801 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
NKX3-1Q99801 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms