Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.23
VRK3Q8IV63 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VRK3Q8IV63 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VRK3Q8IV63 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
VRK3Q8IV63 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.51■□□□□ 0.23
VRK3Q8IV63 AC084018.2-201ENST00000613093 2607 ntBASIC16.51■□□□□ 0.23
VRK3Q8IV63 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.51■□□□□ 0.23
VRK3Q8IV63 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.51■□□□□ 0.23
VRK3Q8IV63 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.51■□□□□ 0.23
VRK3Q8IV63 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.51■□□□□ 0.23
VRK3Q8IV63 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 AC131009.4-201ENST00000624048 1740 ntBASIC16.51■□□□□ 0.23
VRK3Q8IV63 AL671710.1-201ENST00000610245 2349 ntBASIC16.51■□□□□ 0.23
VRK3Q8IV63 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 AL022342.1-201ENST00000400363 863 ntBASIC16.51■□□□□ 0.23
VRK3Q8IV63 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.51■□□□□ 0.23
VRK3Q8IV63 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
VRK3Q8IV63 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.51■□□□□ 0.23
VRK3Q8IV63 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 AC018845.2-201ENST00000568326 409 ntBASIC16.51■□□□□ 0.23
VRK3Q8IV63 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.51■□□□□ 0.23
VRK3Q8IV63 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.51■□□□□ 0.23
VRK3Q8IV63 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.51■□□□□ 0.23
VRK3Q8IV63 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.51■□□□□ 0.23
VRK3Q8IV63 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.51■□□□□ 0.23
VRK3Q8IV63 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
VRK3Q8IV63 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
VRK3Q8IV63 SNX33P1-201ENST00000592116 1762 ntBASIC16.51■□□□□ 0.23
VRK3Q8IV63 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.51■□□□□ 0.23
VRK3Q8IV63 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
VRK3Q8IV63 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.51■□□□□ 0.23
VRK3Q8IV63 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
VRK3Q8IV63 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 ZNF259P1-201ENST00000407656 1365 ntBASIC16.51■□□□□ 0.23
VRK3Q8IV63 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
VRK3Q8IV63 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VRK3Q8IV63 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.5■□□□□ 0.23
VRK3Q8IV63 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC16.5■□□□□ 0.23
VRK3Q8IV63 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
VRK3Q8IV63 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.5■□□□□ 0.23
VRK3Q8IV63 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VRK3Q8IV63 AL353732.1-201ENST00000569618 1459 ntBASIC16.5■□□□□ 0.23
VRK3Q8IV63 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VRK3Q8IV63 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VRK3Q8IV63 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VRK3Q8IV63 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC16.5■□□□□ 0.23
VRK3Q8IV63 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
VRK3Q8IV63 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
VRK3Q8IV63 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.5■□□□□ 0.23
VRK3Q8IV63 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.5■□□□□ 0.23
VRK3Q8IV63 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.5■□□□□ 0.23
VRK3Q8IV63 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
VRK3Q8IV63 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.5■□□□□ 0.23
VRK3Q8IV63 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.5■□□□□ 0.23
VRK3Q8IV63 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.5■□□□□ 0.23
VRK3Q8IV63 AC140113.2-201ENST00000604370 208 ntBASIC16.5■□□□□ 0.23
VRK3Q8IV63 AC013467.2-201ENST00000605472 835 ntBASIC16.5■□□□□ 0.23
VRK3Q8IV63 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.5■□□□□ 0.23
VRK3Q8IV63 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
VRK3Q8IV63 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.5■□□□□ 0.23
VRK3Q8IV63 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VRK3Q8IV63 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VRK3Q8IV63 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VRK3Q8IV63 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VRK3Q8IV63 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VRK3Q8IV63 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
VRK3Q8IV63 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.5■□□□□ 0.23
VRK3Q8IV63 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VRK3Q8IV63 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VRK3Q8IV63 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC16.49■□□□□ 0.23
VRK3Q8IV63 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VRK3Q8IV63 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
VRK3Q8IV63 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
VRK3Q8IV63 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VRK3Q8IV63 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
VRK3Q8IV63 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VRK3Q8IV63 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VRK3Q8IV63 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
VRK3Q8IV63 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.49■□□□□ 0.23
VRK3Q8IV63 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
VRK3Q8IV63 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.49■□□□□ 0.23
VRK3Q8IV63 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms