Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 AL671710.1-201ENST00000610245 2349 ntBASIC11.61□□□□□ -0.55
CSMD3Q7Z407 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
CSMD3Q7Z407 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 AL079307.3-201ENST00000556114 283 ntBASIC11.6□□□□□ -0.55
CSMD3Q7Z407 AC023310.3-201ENST00000557027 670 ntBASIC11.6□□□□□ -0.55
CSMD3Q7Z407 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 AC100756.1-201ENST00000562736 682 ntBASIC11.6□□□□□ -0.55
CSMD3Q7Z407 AC138749.3-201ENST00000567691 622 ntBASIC11.6□□□□□ -0.55
CSMD3Q7Z407 AC116165.1-201ENST00000611806 668 ntBASIC11.6□□□□□ -0.55
CSMD3Q7Z407 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 AC005332.8-201ENST00000622750 2735 ntBASIC11.6□□□□□ -0.55
CSMD3Q7Z407 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 AC010319.3-201ENST00000597028 470 ntBASIC11.6□□□□□ -0.55
CSMD3Q7Z407 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 AC068587.10-201ENST00000641210 219 ntBASIC11.6□□□□□ -0.55
CSMD3Q7Z407 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CSMD3Q7Z407 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
CSMD3Q7Z407 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CSMD3Q7Z407 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CSMD3Q7Z407 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CSMD3Q7Z407 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
CSMD3Q7Z407 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CSMD3Q7Z407 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC11.59□□□□□ -0.55
CSMD3Q7Z407 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC11.59□□□□□ -0.55
CSMD3Q7Z407 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CSMD3Q7Z407 TECR-220ENST00000600083 1204 ntTSL 2 BASIC11.59□□□□□ -0.55
CSMD3Q7Z407 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC11.59□□□□□ -0.55
CSMD3Q7Z407 WT1-AS_2.1-201ENST00000613208 137 ntBASIC11.59□□□□□ -0.55
CSMD3Q7Z407 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
CSMD3Q7Z407 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CSMD3Q7Z407 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CSMD3Q7Z407 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
CSMD3Q7Z407 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC11.59□□□□□ -0.55
CSMD3Q7Z407 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC11.59□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms