Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC21.04■□□□□ 0.96
RC3H1Q5TC82 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 AL138688.1-201ENST00000624851 1594 ntBASIC21.03■□□□□ 0.96
RC3H1Q5TC82 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 SLC7A15P-201ENST00000424028 1363 ntBASIC21.03■□□□□ 0.96
RC3H1Q5TC82 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 RPS2P32-201ENST00000439199 892 ntBASIC21.03■□□□□ 0.96
RC3H1Q5TC82 CD81-207ENST00000481687 890 ntTSL 2 BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 AC124947.2-201ENST00000547118 1133 ntBASIC21.03■□□□□ 0.96
RC3H1Q5TC82 AC044860.1-202ENST00000559481 777 ntBASIC21.03■□□□□ 0.96
RC3H1Q5TC82 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 AC008494.3-201ENST00000606615 944 ntBASIC21.03■□□□□ 0.96
RC3H1Q5TC82 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 AC006277.1-201ENST00000624348 1610 ntBASIC21.03■□□□□ 0.96
RC3H1Q5TC82 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RC3H1Q5TC82 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RC3H1Q5TC82 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RC3H1Q5TC82 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC21.02■□□□□ 0.96
RC3H1Q5TC82 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
RC3H1Q5TC82 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC21.02■□□□□ 0.96
RC3H1Q5TC82 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
RC3H1Q5TC82 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RC3H1Q5TC82 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RC3H1Q5TC82 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RC3H1Q5TC82 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
RC3H1Q5TC82 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC21.02■□□□□ 0.96
RC3H1Q5TC82 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
RC3H1Q5TC82 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC21.02■□□□□ 0.96
RC3H1Q5TC82 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC21.02■□□□□ 0.96
RC3H1Q5TC82 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC21.02■□□□□ 0.96
RC3H1Q5TC82 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
RC3H1Q5TC82 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
RC3H1Q5TC82 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC21.02■□□□□ 0.95
RC3H1Q5TC82 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.95
RC3H1Q5TC82 TUBB8P12-201ENST00000308911 1335 ntBASIC21.02■□□□□ 0.95
RC3H1Q5TC82 TUBB7P-202ENST00000428444 1305 ntBASIC21.02■□□□□ 0.95
RC3H1Q5TC82 TUBB8P7-204ENST00000567960 1332 ntBASIC21.02■□□□□ 0.95
RC3H1Q5TC82 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
RC3H1Q5TC82 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 OSM-203ENST00000403463 464 ntTSL 3 BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 MIR1909-201ENST00000411312 80 ntBASIC21.01■□□□□ 0.95
RC3H1Q5TC82 AC112492.5-201ENST00000421897 457 ntBASIC21.01■□□□□ 0.95
RC3H1Q5TC82 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 WASH4P-201ENST00000564273 1246 ntBASIC21.01■□□□□ 0.95
RC3H1Q5TC82 RPS15-212ENST00000593052 629 ntTSL 2 BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
RC3H1Q5TC82 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC21■□□□□ 0.95
RC3H1Q5TC82 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RC3H1Q5TC82 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC21■□□□□ 0.95
RC3H1Q5TC82 AL671710.1-201ENST00000610245 2349 ntBASIC21■□□□□ 0.95
RC3H1Q5TC82 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC21■□□□□ 0.95
RC3H1Q5TC82 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC21■□□□□ 0.95
RC3H1Q5TC82 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC21■□□□□ 0.95
RC3H1Q5TC82 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RC3H1Q5TC82 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RC3H1Q5TC82 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC21■□□□□ 0.95
RC3H1Q5TC82 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms