Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 LBH-203ENST00000404397 543 ntTSL 4 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 LBH-204ENST00000406087 559 ntTSL 4 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 AC096633.1-201ENST00000422446 749 ntBASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 AC002558.1-201ENST00000488906 803 ntBASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 AC139887.3-201ENST00000568585 713 ntBASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 ANKRD20A8P-203ENST00000641373 517 ntBASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 LINC02012-201ENST00000608206 1725 ntBASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 AL391807.1-203ENST00000604392 2365 ntBASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM3Q53GG5 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.15
PDLIM3Q53GG5 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
PDLIM3Q53GG5 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC14.08□□□□□ -0.15
PDLIM3Q53GG5 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
PDLIM3Q53GG5 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.08□□□□□ -0.15
PDLIM3Q53GG5 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.15
PDLIM3Q53GG5 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
PDLIM3Q53GG5 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
PDLIM3Q53GG5 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms