Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MPDU1-223ENST00000582151 728 ntBASIC17.93■□□□□ 0.46
USP41Q3LFD5 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.93■□□□□ 0.46
USP41Q3LFD5 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC17.93■□□□□ 0.46
USP41Q3LFD5 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USP41Q3LFD5 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.93■□□□□ 0.46
USP41Q3LFD5 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP41Q3LFD5 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP41Q3LFD5 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP41Q3LFD5 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.93■□□□□ 0.46
USP41Q3LFD5 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.93■□□□□ 0.46
USP41Q3LFD5 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP41Q3LFD5 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP41Q3LFD5 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP41Q3LFD5 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
USP41Q3LFD5 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
USP41Q3LFD5 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP41Q3LFD5 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
USP41Q3LFD5 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP41Q3LFD5 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP41Q3LFD5 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP41Q3LFD5 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP41Q3LFD5 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP41Q3LFD5 AC012313.1-201ENST00000593393 3059 ntBASIC17.92■□□□□ 0.46
USP41Q3LFD5 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP41Q3LFD5 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
USP41Q3LFD5 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP41Q3LFD5 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP41Q3LFD5 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 DUX4L27-201ENST00000554796 1261 ntBASIC17.92■□□□□ 0.46
USP41Q3LFD5 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP41Q3LFD5 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 AC084121.4-201ENST00000641598 221 ntBASIC17.92■□□□□ 0.46
USP41Q3LFD5 AF228730.8-201ENST00000642140 221 ntBASIC17.92■□□□□ 0.46
USP41Q3LFD5 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP41Q3LFD5 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP41Q3LFD5 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP41Q3LFD5 AC134043.2-201ENST00000624206 2238 ntBASIC17.92■□□□□ 0.46
USP41Q3LFD5 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 TUBB3P1-201ENST00000405796 1332 ntBASIC17.92■□□□□ 0.46
USP41Q3LFD5 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP41Q3LFD5 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP41Q3LFD5 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
USP41Q3LFD5 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
USP41Q3LFD5 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP41Q3LFD5 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.92■□□□□ 0.46
USP41Q3LFD5 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.91■□□□□ 0.46
USP41Q3LFD5 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
USP41Q3LFD5 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP41Q3LFD5 KRT8P49-201ENST00000604166 1432 ntBASIC17.91■□□□□ 0.46
USP41Q3LFD5 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
USP41Q3LFD5 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP41Q3LFD5 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.91■□□□□ 0.46
USP41Q3LFD5 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP41Q3LFD5 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP41Q3LFD5 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
USP41Q3LFD5 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.91■□□□□ 0.46
USP41Q3LFD5 RNA5SP421-201ENST00000516864 134 ntBASIC17.91■□□□□ 0.46
USP41Q3LFD5 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
USP41Q3LFD5 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.91■□□□□ 0.46
USP41Q3LFD5 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.91■□□□□ 0.46
USP41Q3LFD5 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.91■□□□□ 0.46
USP41Q3LFD5 AC051619.7-201ENST00000568314 623 ntBASIC17.91■□□□□ 0.46
USP41Q3LFD5 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP41Q3LFD5 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP41Q3LFD5 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.91■□□□□ 0.46
USP41Q3LFD5 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP41Q3LFD5 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.91■□□□□ 0.46
USP41Q3LFD5 AC124067.4-201ENST00000519691 2379 ntBASIC17.91■□□□□ 0.46
USP41Q3LFD5 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
USP41Q3LFD5 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP41Q3LFD5 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
USP41Q3LFD5 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP41Q3LFD5 FRMD8P1-201ENST00000440433 1524 ntBASIC17.91■□□□□ 0.46
USP41Q3LFD5 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
USP41Q3LFD5 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.91■□□□□ 0.46
USP41Q3LFD5 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
USP41Q3LFD5 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
USP41Q3LFD5 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
USP41Q3LFD5 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP41Q3LFD5 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
USP41Q3LFD5 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms