Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
HDAC4P56524 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.69■□□□□ 0.42
HDAC4P56524 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
HDAC4P56524 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.69■□□□□ 0.42
HDAC4P56524 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.69■□□□□ 0.42
HDAC4P56524 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.69■□□□□ 0.42
HDAC4P56524 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
HDAC4P56524 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.69■□□□□ 0.42
HDAC4P56524 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.69■□□□□ 0.42
HDAC4P56524 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
HDAC4P56524 AC005593.1-201ENST00000624894 515 ntBASIC17.69■□□□□ 0.42
HDAC4P56524 PGM5P2-202ENST00000637225 1043 ntBASIC17.69■□□□□ 0.42
HDAC4P56524 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.69■□□□□ 0.42
HDAC4P56524 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.69■□□□□ 0.42
HDAC4P56524 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HDAC4P56524 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDAC4P56524 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDAC4P56524 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDAC4P56524 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HDAC4P56524 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
HDAC4P56524 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.68■□□□□ 0.42
HDAC4P56524 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
HDAC4P56524 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.68■□□□□ 0.42
HDAC4P56524 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HDAC4P56524 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.68■□□□□ 0.42
HDAC4P56524 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.68■□□□□ 0.42
HDAC4P56524 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
HDAC4P56524 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
HDAC4P56524 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.68■□□□□ 0.42
HDAC4P56524 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.68■□□□□ 0.42
HDAC4P56524 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.68■□□□□ 0.42
HDAC4P56524 AC098831.1-202ENST00000438821 336 ntBASIC17.68■□□□□ 0.42
HDAC4P56524 FDX1P1-201ENST00000449115 551 ntBASIC17.68■□□□□ 0.42
HDAC4P56524 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.68■□□□□ 0.42
HDAC4P56524 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.68■□□□□ 0.42
HDAC4P56524 LITAF-211ENST00000572255 516 ntTSL 4 BASIC17.68■□□□□ 0.42
HDAC4P56524 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
HDAC4P56524 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
HDAC4P56524 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.68■□□□□ 0.42
HDAC4P56524 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.68■□□□□ 0.42
HDAC4P56524 GGTLC5P-201ENST00000617623 998 ntBASIC17.68■□□□□ 0.42
HDAC4P56524 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.68■□□□□ 0.42
HDAC4P56524 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.68■□□□□ 0.42
HDAC4P56524 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HDAC4P56524 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
HDAC4P56524 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
HDAC4P56524 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
HDAC4P56524 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.68■□□□□ 0.42
HDAC4P56524 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.68■□□□□ 0.42
HDAC4P56524 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HDAC4P56524 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.68■□□□□ 0.42
HDAC4P56524 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HDAC4P56524 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HDAC4P56524 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
HDAC4P56524 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.67■□□□□ 0.42
HDAC4P56524 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HDAC4P56524 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HDAC4P56524 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HDAC4P56524 FER1L4-210ENST00000615531 5998 ntBASIC17.67■□□□□ 0.42
HDAC4P56524 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.67■□□□□ 0.42
HDAC4P56524 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HDAC4P56524 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.67■□□□□ 0.42
HDAC4P56524 AC108073.2-201ENST00000464002 357 ntBASIC17.67■□□□□ 0.42
HDAC4P56524 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.67■□□□□ 0.42
HDAC4P56524 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.67■□□□□ 0.42
HDAC4P56524 OR7E47P-204ENST00000575924 449 ntBASIC17.67■□□□□ 0.42
HDAC4P56524 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HDAC4P56524 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
HDAC4P56524 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HDAC4P56524 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
HDAC4P56524 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
HDAC4P56524 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HDAC4P56524 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.67■□□□□ 0.42
HDAC4P56524 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HDAC4P56524 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HDAC4P56524 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HDAC4P56524 AL391005.1-201ENST00000623953 2435 ntBASIC17.67■□□□□ 0.42
HDAC4P56524 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HDAC4P56524 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
HDAC4P56524 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms