Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC19.49■□□□□ 0.71
CTCFP49711 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC19.49■□□□□ 0.71
CTCFP49711 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CTCFP49711 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CTCFP49711 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CTCFP49711 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
CTCFP49711 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
CTCFP49711 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
CTCFP49711 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.49■□□□□ 0.71
CTCFP49711 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CTCFP49711 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CTCFP49711 AP3S2-216ENST00000617003 1561 ntBASIC19.49■□□□□ 0.71
CTCFP49711 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
CTCFP49711 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CTCFP49711 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC19.48■□□□□ 0.71
CTCFP49711 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CTCFP49711 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CTCFP49711 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CTCFP49711 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CTCFP49711 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CTCFP49711 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CTCFP49711 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.48■□□□□ 0.71
CTCFP49711 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.48■□□□□ 0.71
CTCFP49711 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CTCFP49711 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CTCFP49711 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC19.48■□□□□ 0.71
CTCFP49711 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CTCFP49711 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
CTCFP49711 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC19.48■□□□□ 0.71
CTCFP49711 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC19.48■□□□□ 0.71
CTCFP49711 KRT43P-201ENST00000434019 910 ntBASIC19.48■□□□□ 0.71
CTCFP49711 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC19.48■□□□□ 0.71
CTCFP49711 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC19.48■□□□□ 0.71
CTCFP49711 AC108725.1-201ENST00000495472 409 ntBASIC19.48■□□□□ 0.71
CTCFP49711 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CTCFP49711 AC055876.2-201ENST00000531834 546 ntBASIC19.48■□□□□ 0.71
CTCFP49711 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC19.48■□□□□ 0.71
CTCFP49711 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC19.48■□□□□ 0.71
CTCFP49711 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC19.48■□□□□ 0.71
CTCFP49711 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC19.48■□□□□ 0.71
CTCFP49711 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC19.48■□□□□ 0.71
CTCFP49711 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CTCFP49711 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CTCFP49711 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.48■□□□□ 0.71
CTCFP49711 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CTCFP49711 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CTCFP49711 AC100803.2-201ENST00000562459 1963 ntBASIC19.48■□□□□ 0.71
CTCFP49711 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC19.48■□□□□ 0.71
CTCFP49711 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CTCFP49711 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CTCFP49711 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTCFP49711 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTCFP49711 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTCFP49711 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTCFP49711 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CTCFP49711 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTCFP49711 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTCFP49711 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.47■□□□□ 0.71
CTCFP49711 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.47■□□□□ 0.71
CTCFP49711 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
CTCFP49711 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTCFP49711 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CTCFP49711 MIR663B-201ENST00000408361 115 ntBASIC19.47■□□□□ 0.71
CTCFP49711 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC19.47■□□□□ 0.71
CTCFP49711 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC19.47■□□□□ 0.71
CTCFP49711 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC19.47■□□□□ 0.71
CTCFP49711 MYCLP2-201ENST00000449268 967 ntBASIC19.47■□□□□ 0.71
CTCFP49711 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC19.47■□□□□ 0.71
CTCFP49711 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTCFP49711 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC19.47■□□□□ 0.71
CTCFP49711 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC19.47■□□□□ 0.71
CTCFP49711 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC19.47■□□□□ 0.71
CTCFP49711 RPS24-214ENST00000613865 538 ntTSL 5 BASIC19.47■□□□□ 0.71
CTCFP49711 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTCFP49711 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTCFP49711 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CTCFP49711 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.47■□□□□ 0.71
CTCFP49711 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CTCFP49711 ANO7L1-203ENST00000602586 1720 ntBASIC19.47■□□□□ 0.71
CTCFP49711 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.47■□□□□ 0.71
CTCFP49711 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTCFP49711 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.47■□□□□ 0.71
CTCFP49711 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
CTCFP49711 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.46■□□□□ 0.71
CTCFP49711 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CTCFP49711 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CTCFP49711 AC012569.1-201ENST00000591191 1524 ntBASIC19.46■□□□□ 0.71
CTCFP49711 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC19.46■□□□□ 0.71
CTCFP49711 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.46■□□□□ 0.71
CTCFP49711 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.46■□□□□ 0.71
CTCFP49711 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC19.46■□□□□ 0.71
CTCFP49711 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CTCFP49711 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC19.46■□□□□ 0.71
CTCFP49711 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CTCFP49711 AC135050.7-201ENST00000624508 2218 ntBASIC19.46■□□□□ 0.71
CTCFP49711 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CTCFP49711 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
CTCFP49711 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CTCFP49711 MIR1247-201ENST00000408206 136 ntBASIC19.46■□□□□ 0.71
CTCFP49711 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms