Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SCN4AP35499 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SCN4AP35499 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SCN4AP35499 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.65■□□□□ 0.74
SCN4AP35499 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC19.65■□□□□ 0.74
SCN4AP35499 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SCN4AP35499 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SCN4AP35499 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC19.65■□□□□ 0.74
SCN4AP35499 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC19.65■□□□□ 0.74
SCN4AP35499 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC19.65■□□□□ 0.74
SCN4AP35499 DERL2-202ENST00000570848 657 ntTSL 5 BASIC19.65■□□□□ 0.74
SCN4AP35499 MIR5189-201ENST00000577370 114 ntBASIC19.65■□□□□ 0.74
SCN4AP35499 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC19.65■□□□□ 0.74
SCN4AP35499 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC19.65■□□□□ 0.74
SCN4AP35499 AL391069.4-201ENST00000609583 481 ntBASIC19.65■□□□□ 0.74
SCN4AP35499 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SCN4AP35499 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SCN4AP35499 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SCN4AP35499 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SCN4AP35499 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SCN4AP35499 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SCN4AP35499 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SCN4AP35499 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SCN4AP35499 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SCN4AP35499 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
SCN4AP35499 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC19.65■□□□□ 0.74
SCN4AP35499 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC19.65■□□□□ 0.74
SCN4AP35499 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC19.65■□□□□ 0.74
SCN4AP35499 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC19.64■□□□□ 0.74
SCN4AP35499 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
SCN4AP35499 AC093525.8-201ENST00000624099 1342 ntBASIC19.64■□□□□ 0.74
SCN4AP35499 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SCN4AP35499 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC19.64■□□□□ 0.74
SCN4AP35499 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC19.64■□□□□ 0.74
SCN4AP35499 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.64■□□□□ 0.73
SCN4AP35499 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SCN4AP35499 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SCN4AP35499 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
SCN4AP35499 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
SCN4AP35499 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
SCN4AP35499 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC19.64■□□□□ 0.73
SCN4AP35499 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC19.64■□□□□ 0.73
SCN4AP35499 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC19.64■□□□□ 0.73
SCN4AP35499 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC19.64■□□□□ 0.73
SCN4AP35499 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC19.64■□□□□ 0.73
SCN4AP35499 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC19.64■□□□□ 0.73
SCN4AP35499 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SCN4AP35499 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC19.64■□□□□ 0.73
SCN4AP35499 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC19.64■□□□□ 0.73
SCN4AP35499 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC19.64■□□□□ 0.73
SCN4AP35499 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC19.64■□□□□ 0.73
SCN4AP35499 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC19.64■□□□□ 0.73
SCN4AP35499 PPA1-206ENST00000625364 644 ntTSL 5 BASIC19.64■□□□□ 0.73
SCN4AP35499 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SCN4AP35499 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.64■□□□□ 0.73
SCN4AP35499 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.64■□□□□ 0.73
SCN4AP35499 FRMD8P1-201ENST00000440433 1524 ntBASIC19.64■□□□□ 0.73
SCN4AP35499 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SCN4AP35499 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SCN4AP35499 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.64■□□□□ 0.73
SCN4AP35499 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
SCN4AP35499 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC19.63■□□□□ 0.73
SCN4AP35499 FO681548.1-201ENST00000455617 1132 ntBASIC19.63■□□□□ 0.73
SCN4AP35499 PFN1P12-201ENST00000455938 534 ntBASIC19.63■□□□□ 0.73
SCN4AP35499 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC19.63■□□□□ 0.73
SCN4AP35499 RARRES2P5-201ENST00000564013 466 ntBASIC19.63■□□□□ 0.73
SCN4AP35499 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SCN4AP35499 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.63■□□□□ 0.73
SCN4AP35499 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SCN4AP35499 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SCN4AP35499 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
SCN4AP35499 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.63■□□□□ 0.73
SCN4AP35499 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
SCN4AP35499 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SCN4AP35499 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19.63■□□□□ 0.73
SCN4AP35499 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC19.63■□□□□ 0.73
SCN4AP35499 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
SCN4AP35499 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC19.62■□□□□ 0.73
SCN4AP35499 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SCN4AP35499 ELK2AP-201ENST00000392510 1007 ntBASIC19.62■□□□□ 0.73
SCN4AP35499 USB1-202ENST00000423271 1217 ntTSL 2 BASIC19.62■□□□□ 0.73
SCN4AP35499 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC19.62■□□□□ 0.73
SCN4AP35499 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC19.62■□□□□ 0.73
SCN4AP35499 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC19.62■□□□□ 0.73
SCN4AP35499 MIR6069-201ENST00000620069 79 ntBASIC19.62■□□□□ 0.73
SCN4AP35499 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
SCN4AP35499 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC19.62■□□□□ 0.73
SCN4AP35499 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SCN4AP35499 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SCN4AP35499 AC098818.2-201ENST00000564925 2320 ntBASIC19.62■□□□□ 0.73
SCN4AP35499 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SCN4AP35499 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SCN4AP35499 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
SCN4AP35499 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SCN4AP35499 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
SCN4AP35499 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SCN4AP35499 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SCN4AP35499 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SCN4AP35499 RPL7P3-201ENST00000441388 714 ntBASIC19.62■□□□□ 0.73
SCN4AP35499 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms