Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
COL5A1P20908 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC16.01■□□□□ 0.15
COL5A1P20908 RPL37AP1-201ENST00000412502 279 ntBASIC16.01■□□□□ 0.15
COL5A1P20908 AC245100.3-201ENST00000441281 285 ntBASIC16.01■□□□□ 0.15
COL5A1P20908 RNA5SP410-201ENST00000516285 106 ntBASIC16.01■□□□□ 0.15
COL5A1P20908 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.01■□□□□ 0.15
COL5A1P20908 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.01■□□□□ 0.15
COL5A1P20908 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.01■□□□□ 0.15
COL5A1P20908 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
COL5A1P20908 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.01■□□□□ 0.15
COL5A1P20908 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
COL5A1P20908 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.01■□□□□ 0.15
COL5A1P20908 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
COL5A1P20908 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.01■□□□□ 0.15
COL5A1P20908 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
COL5A1P20908 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 ACA64.2-201ENST00000459014 129 ntBASIC16.01■□□□□ 0.15
COL5A1P20908 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC16.01■□□□□ 0.15
COL5A1P20908 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC16.01■□□□□ 0.15
COL5A1P20908 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.01■□□□□ 0.15
COL5A1P20908 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
COL5A1P20908 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC16.01■□□□□ 0.15
COL5A1P20908 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.01■□□□□ 0.15
COL5A1P20908 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC16.01■□□□□ 0.15
COL5A1P20908 SPTSSB-204ENST00000617024 1292 ntBASIC16.01■□□□□ 0.15
COL5A1P20908 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.01■□□□□ 0.15
COL5A1P20908 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.01■□□□□ 0.15
COL5A1P20908 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC16■□□□□ 0.15
COL5A1P20908 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
COL5A1P20908 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
COL5A1P20908 PKD1P6-201ENST00000343738 4769 ntBASIC16■□□□□ 0.15
COL5A1P20908 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL5A1P20908 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL5A1P20908 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL5A1P20908 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL5A1P20908 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16■□□□□ 0.15
COL5A1P20908 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL5A1P20908 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
COL5A1P20908 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL5A1P20908 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
COL5A1P20908 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC16■□□□□ 0.15
COL5A1P20908 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16■□□□□ 0.15
COL5A1P20908 AP006294.1-201ENST00000415407 339 ntBASIC16■□□□□ 0.15
COL5A1P20908 ARSEP1-201ENST00000420443 635 ntBASIC16■□□□□ 0.15
COL5A1P20908 DFFBP1-201ENST00000433250 979 ntBASIC16■□□□□ 0.15
COL5A1P20908 AL353779.1-201ENST00000434793 351 ntBASIC16■□□□□ 0.15
COL5A1P20908 PTPA-220ENST00000436883 532 ntTSL 4 BASIC16■□□□□ 0.15
COL5A1P20908 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16■□□□□ 0.15
COL5A1P20908 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC16■□□□□ 0.15
COL5A1P20908 HILS1-202ENST00000545329 423 ntBASIC16■□□□□ 0.15
COL5A1P20908 AC124947.2-201ENST00000547118 1133 ntBASIC16■□□□□ 0.15
COL5A1P20908 AL079307.3-201ENST00000556114 283 ntBASIC16■□□□□ 0.15
COL5A1P20908 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16■□□□□ 0.15
COL5A1P20908 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16■□□□□ 0.15
COL5A1P20908 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC16■□□□□ 0.15
COL5A1P20908 AC108860.2-201ENST00000562760 2183 ntBASIC16■□□□□ 0.15
COL5A1P20908 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16■□□□□ 0.15
COL5A1P20908 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL5A1P20908 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16■□□□□ 0.15
COL5A1P20908 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
COL5A1P20908 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
COL5A1P20908 SLC7A15P-201ENST00000424028 1363 ntBASIC15.99■□□□□ 0.15
COL5A1P20908 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
COL5A1P20908 RNF165-205ENST00000588679 2904 ntBASIC15.99■□□□□ 0.15
COL5A1P20908 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
COL5A1P20908 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL5A1P20908 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL5A1P20908 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC15.99■□□□□ 0.15
COL5A1P20908 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
COL5A1P20908 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
COL5A1P20908 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
COL5A1P20908 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC15.99■□□□□ 0.15
COL5A1P20908 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.99■□□□□ 0.15
COL5A1P20908 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
COL5A1P20908 AC138969.3-201ENST00000546612 1459 ntBASIC15.99■□□□□ 0.15
COL5A1P20908 AC138932.2-201ENST00000548268 1459 ntBASIC15.99■□□□□ 0.15
COL5A1P20908 AC126755.4-201ENST00000549796 1459 ntBASIC15.99■□□□□ 0.15
COL5A1P20908 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC15.99■□□□□ 0.15
COL5A1P20908 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
COL5A1P20908 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms