Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 KRT18P34-201ENST00000488218 1270 ntBASIC18.28■□□□□ 0.52
CHRNA1P02708 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHRNA1P02708 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC18.28■□□□□ 0.52
CHRNA1P02708 RARRES2P9-201ENST00000565168 469 ntBASIC18.28■□□□□ 0.52
CHRNA1P02708 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC18.28■□□□□ 0.52
CHRNA1P02708 AC018529.1-201ENST00000613063 361 ntBASIC18.28■□□□□ 0.52
CHRNA1P02708 HFE2-206ENST00000634927 506 ntTSL 4 BASIC18.28■□□□□ 0.52
CHRNA1P02708 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CHRNA1P02708 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CHRNA1P02708 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CHRNA1P02708 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHRNA1P02708 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHRNA1P02708 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CHRNA1P02708 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHRNA1P02708 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHRNA1P02708 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CHRNA1P02708 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC18.28■□□□□ 0.52
CHRNA1P02708 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHRNA1P02708 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.28■□□□□ 0.52
CHRNA1P02708 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHRNA1P02708 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CHRNA1P02708 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHRNA1P02708 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHRNA1P02708 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHRNA1P02708 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHRNA1P02708 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.27■□□□□ 0.52
CHRNA1P02708 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHRNA1P02708 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHRNA1P02708 COPE-202ENST00000349893 948 ntTSL 2 BASIC18.27■□□□□ 0.52
CHRNA1P02708 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC18.27■□□□□ 0.52
CHRNA1P02708 AC004890.2-204ENST00000481968 304 ntBASIC18.27■□□□□ 0.52
CHRNA1P02708 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.27■□□□□ 0.52
CHRNA1P02708 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC18.27■□□□□ 0.52
CHRNA1P02708 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
CHRNA1P02708 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHRNA1P02708 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.27■□□□□ 0.52
CHRNA1P02708 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHRNA1P02708 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC18.27■□□□□ 0.52
CHRNA1P02708 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
CHRNA1P02708 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CHRNA1P02708 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.27■□□□□ 0.51
CHRNA1P02708 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.27■□□□□ 0.51
CHRNA1P02708 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CHRNA1P02708 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
CHRNA1P02708 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHRNA1P02708 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHRNA1P02708 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.26■□□□□ 0.51
CHRNA1P02708 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.26■□□□□ 0.51
CHRNA1P02708 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CHRNA1P02708 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHRNA1P02708 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.26■□□□□ 0.51
CHRNA1P02708 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHRNA1P02708 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.26■□□□□ 0.51
CHRNA1P02708 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHRNA1P02708 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHRNA1P02708 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
CHRNA1P02708 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.26■□□□□ 0.51
CHRNA1P02708 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHRNA1P02708 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHRNA1P02708 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHRNA1P02708 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHRNA1P02708 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC18.26■□□□□ 0.51
CHRNA1P02708 AC241585.1-201ENST00000433527 519 ntBASIC18.26■□□□□ 0.51
CHRNA1P02708 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC18.26■□□□□ 0.51
CHRNA1P02708 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC18.26■□□□□ 0.51
CHRNA1P02708 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHRNA1P02708 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHRNA1P02708 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHRNA1P02708 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHRNA1P02708 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CHRNA1P02708 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHRNA1P02708 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.26■□□□□ 0.51
CHRNA1P02708 AL671710.1-201ENST00000610245 2349 ntBASIC18.26■□□□□ 0.51
CHRNA1P02708 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CHRNA1P02708 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHRNA1P02708 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHRNA1P02708 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHRNA1P02708 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHRNA1P02708 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CHRNA1P02708 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHRNA1P02708 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CHRNA1P02708 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.25■□□□□ 0.51
CHRNA1P02708 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
CHRNA1P02708 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHRNA1P02708 MRPS18AP1-201ENST00000414458 589 ntBASIC18.25■□□□□ 0.51
CHRNA1P02708 AC124947.2-201ENST00000547118 1133 ntBASIC18.25■□□□□ 0.51
CHRNA1P02708 AL590560.3-201ENST00000623350 461 ntBASIC18.25■□□□□ 0.51
CHRNA1P02708 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CHRNA1P02708 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.25■□□□□ 0.51
CHRNA1P02708 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CHRNA1P02708 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
CHRNA1P02708 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC18.25■□□□□ 0.51
CHRNA1P02708 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHRNA1P02708 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CHRNA1P02708 AC007613.1-201ENST00000572811 2597 ntBASIC18.25■□□□□ 0.51
CHRNA1P02708 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHRNA1P02708 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHRNA1P02708 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CHRNA1P02708 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CHRNA1P02708 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms