Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 MYCLP1-201ENST00000372451 1075 ntBASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 AL118508.1-201ENST00000613502 2345 ntBASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PCDHGA3Q9Y5H0 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 IGLL3P-201ENST00000412472 434 ntBASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 AL596442.2-201ENST00000610240 980 ntBASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 AL513190.1-201ENST00000621254 727 ntBASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 AP001094.4-201ENST00000579008 2176 ntBASIC16.53■□□□□ 0.24
PCDHGA3Q9Y5H0 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 AC006116.8-202ENST00000587620 1550 ntBASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 AC097637.2-201ENST00000624096 1997 ntBASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 PTCHD3P3-201ENST00000403073 906 ntBASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 PDPK2P-202ENST00000562415 1191 ntBASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
PCDHGA3Q9Y5H0 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PCDHGA3Q9Y5H0 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PCDHGA3Q9Y5H0 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PCDHGA3Q9Y5H0 ELL2P1-201ENST00000413990 1906 ntBASIC16.52■□□□□ 0.23
PCDHGA3Q9Y5H0 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PCDHGA3Q9Y5H0 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PCDHGA3Q9Y5H0 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
PCDHGA3Q9Y5H0 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PCDHGA3Q9Y5H0 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PCDHGA3Q9Y5H0 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PCDHGA3Q9Y5H0 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
PCDHGA3Q9Y5H0 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
PCDHGA3Q9Y5H0 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
PCDHGA3Q9Y5H0 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.52■□□□□ 0.23
PCDHGA3Q9Y5H0 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
PCDHGA3Q9Y5H0 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms