Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC31.9■■■□□ 2.7
SHROOM4Q9ULL8 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC31.9■■■□□ 2.7
SHROOM4Q9ULL8 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC31.9■■■□□ 2.7
SHROOM4Q9ULL8 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
SHROOM4Q9ULL8 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC31.89■■■□□ 2.7
SHROOM4Q9ULL8 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
SHROOM4Q9ULL8 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
SHROOM4Q9ULL8 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
SHROOM4Q9ULL8 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC31.89■■■□□ 2.7
SHROOM4Q9ULL8 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
SHROOM4Q9ULL8 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC31.89■■■□□ 2.7
SHROOM4Q9ULL8 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
SHROOM4Q9ULL8 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
SHROOM4Q9ULL8 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC31.89■■■□□ 2.7
SHROOM4Q9ULL8 AC007967.4-201ENST00000614700 386 ntBASIC31.89■■■□□ 2.7
SHROOM4Q9ULL8 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC31.89■■■□□ 2.7
SHROOM4Q9ULL8 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC31.89■■■□□ 2.69
SHROOM4Q9ULL8 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC31.89■■■□□ 2.69
SHROOM4Q9ULL8 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
SHROOM4Q9ULL8 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
SHROOM4Q9ULL8 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC31.88■■■□□ 2.69
SHROOM4Q9ULL8 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC31.88■■■□□ 2.69
SHROOM4Q9ULL8 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC31.88■■■□□ 2.69
SHROOM4Q9ULL8 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC31.88■■■□□ 2.69
SHROOM4Q9ULL8 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC31.88■■■□□ 2.69
SHROOM4Q9ULL8 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC31.88■■■□□ 2.69
SHROOM4Q9ULL8 AC005412.3-201ENST00000580309 715 ntBASIC31.88■■■□□ 2.69
SHROOM4Q9ULL8 AL162274.1-201ENST00000617191 1098 ntBASIC31.88■■■□□ 2.69
SHROOM4Q9ULL8 AC116353.5-201ENST00000638148 1699 ntBASIC31.88■■■□□ 2.69
SHROOM4Q9ULL8 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC31.88■■■□□ 2.69
SHROOM4Q9ULL8 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
SHROOM4Q9ULL8 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC31.88■■■□□ 2.69
SHROOM4Q9ULL8 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
SHROOM4Q9ULL8 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC31.87■■■□□ 2.69
SHROOM4Q9ULL8 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC31.87■■■□□ 2.69
SHROOM4Q9ULL8 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
SHROOM4Q9ULL8 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC31.87■■■□□ 2.69
SHROOM4Q9ULL8 CROCCP2-202ENST00000412962 2773 ntBASIC31.87■■■□□ 2.69
SHROOM4Q9ULL8 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC31.87■■■□□ 2.69
SHROOM4Q9ULL8 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
SHROOM4Q9ULL8 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC31.87■■■□□ 2.69
SHROOM4Q9ULL8 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC31.87■■■□□ 2.69
SHROOM4Q9ULL8 REEP4-207ENST00000523293 913 ntTSL 3 BASIC31.87■■■□□ 2.69
SHROOM4Q9ULL8 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC31.87■■■□□ 2.69
SHROOM4Q9ULL8 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC31.87■■■□□ 2.69
SHROOM4Q9ULL8 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC31.87■■■□□ 2.69
SHROOM4Q9ULL8 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
SHROOM4Q9ULL8 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC31.87■■■□□ 2.69
SHROOM4Q9ULL8 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC31.87■■■□□ 2.69
SHROOM4Q9ULL8 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
SHROOM4Q9ULL8 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
SHROOM4Q9ULL8 AC098614.1-201ENST00000368528 745 ntBASIC31.86■■■□□ 2.69
SHROOM4Q9ULL8 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
SHROOM4Q9ULL8 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC31.86■■■□□ 2.69
SHROOM4Q9ULL8 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
SHROOM4Q9ULL8 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC31.86■■■□□ 2.69
SHROOM4Q9ULL8 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC31.86■■■□□ 2.69
SHROOM4Q9ULL8 MIR6805-201ENST00000615055 62 ntBASIC31.86■■■□□ 2.69
SHROOM4Q9ULL8 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
SHROOM4Q9ULL8 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC31.86■■■□□ 2.69
SHROOM4Q9ULL8 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC31.86■■■□□ 2.69
SHROOM4Q9ULL8 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
SHROOM4Q9ULL8 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC31.86■■■□□ 2.69
SHROOM4Q9ULL8 FZD10-202ENST00000539839 3282 ntBASIC31.86■■■□□ 2.69
SHROOM4Q9ULL8 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC31.86■■■□□ 2.69
SHROOM4Q9ULL8 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
SHROOM4Q9ULL8 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 API5-211ENST00000534695 560 ntTSL 5 BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 CDK4-206ENST00000549606 558 ntTSL 2 BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 AC138969.3-201ENST00000546612 1459 ntBASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 AC138932.2-201ENST00000548268 1459 ntBASIC31.84■■■□□ 2.69
SHROOM4Q9ULL8 AC126755.4-201ENST00000549796 1459 ntBASIC31.84■■■□□ 2.69
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms