Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VMP1Q96GC9 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VMP1Q96GC9 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
VMP1Q96GC9 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VMP1Q96GC9 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VMP1Q96GC9 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VMP1Q96GC9 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VMP1Q96GC9 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
VMP1Q96GC9 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VMP1Q96GC9 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.31■□□□□ 0.2
VMP1Q96GC9 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VMP1Q96GC9 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VMP1Q96GC9 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VMP1Q96GC9 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VMP1Q96GC9 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VMP1Q96GC9 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
VMP1Q96GC9 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VMP1Q96GC9 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
VMP1Q96GC9 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VMP1Q96GC9 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VMP1Q96GC9 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VMP1Q96GC9 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VMP1Q96GC9 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VMP1Q96GC9 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VMP1Q96GC9 SPDYE21P-201ENST00000413323 827 ntBASIC16.3■□□□□ 0.2
VMP1Q96GC9 AL020989.1-201ENST00000422979 469 ntBASIC16.3■□□□□ 0.2
VMP1Q96GC9 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 RNPS1P1-201ENST00000507437 918 ntBASIC16.3■□□□□ 0.2
VMP1Q96GC9 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 NKAPP1-205ENST00000585790 367 ntBASIC16.3■□□□□ 0.2
VMP1Q96GC9 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 AL773604.1-201ENST00000617417 272 ntBASIC16.3■□□□□ 0.2
VMP1Q96GC9 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 LINC01451-201ENST00000623792 534 ntBASIC16.3■□□□□ 0.2
VMP1Q96GC9 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VMP1Q96GC9 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VMP1Q96GC9 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
VMP1Q96GC9 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VMP1Q96GC9 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
VMP1Q96GC9 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VMP1Q96GC9 AC007326.2-201ENST00000624224 7579 ntBASIC16.29■□□□□ 0.2
VMP1Q96GC9 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VMP1Q96GC9 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VMP1Q96GC9 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VMP1Q96GC9 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
VMP1Q96GC9 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VMP1Q96GC9 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VMP1Q96GC9 AC132938.5-201ENST00000624980 1813 ntBASIC16.29■□□□□ 0.2
VMP1Q96GC9 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VMP1Q96GC9 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VMP1Q96GC9 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VMP1Q96GC9 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VMP1Q96GC9 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VMP1Q96GC9 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VMP1Q96GC9 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.29■□□□□ 0.2
VMP1Q96GC9 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
VMP1Q96GC9 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VMP1Q96GC9 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.29■□□□□ 0.2
VMP1Q96GC9 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VMP1Q96GC9 MRPL3P1-201ENST00000400109 1033 ntBASIC16.29■□□□□ 0.2
VMP1Q96GC9 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VMP1Q96GC9 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VMP1Q96GC9 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.29■□□□□ 0.2
VMP1Q96GC9 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.29■□□□□ 0.2
VMP1Q96GC9 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.29■□□□□ 0.2
VMP1Q96GC9 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.29■□□□□ 0.2
VMP1Q96GC9 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.29■□□□□ 0.2
VMP1Q96GC9 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VMP1Q96GC9 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
VMP1Q96GC9 AC021087.4-201ENST00000563761 564 ntBASIC16.29■□□□□ 0.2
VMP1Q96GC9 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.29■□□□□ 0.2
VMP1Q96GC9 STK25P1-201ENST00000585406 838 ntBASIC16.29■□□□□ 0.2
VMP1Q96GC9 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.29■□□□□ 0.2
VMP1Q96GC9 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.29■□□□□ 0.2
VMP1Q96GC9 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VMP1Q96GC9 AL022326.1-202ENST00000641533 845 ntBASIC16.29■□□□□ 0.2
VMP1Q96GC9 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VMP1Q96GC9 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VMP1Q96GC9 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.29■□□□□ 0.2
VMP1Q96GC9 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.29■□□□□ 0.2
VMP1Q96GC9 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.29■□□□□ 0.2
VMP1Q96GC9 CROCCP2-202ENST00000412962 2773 ntBASIC16.29■□□□□ 0.2
VMP1Q96GC9 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VMP1Q96GC9 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms