Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 SPDYE11-202ENST00000450699 704 ntBASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 AC079140.1-201ENST00000508039 487 ntBASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 FAM86C2P-203ENST00000528684 1004 ntBASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 SPDYE9P-201ENST00000570642 692 ntBASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 MIR3909-201ENST00000579518 119 ntBASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 SPDYE10P-202ENST00000612005 668 ntBASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 SPDYE8P-202ENST00000612377 668 ntBASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 AL161645.1-201ENST00000622716 1255 ntBASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.75■□□□□ 0.59
CCDC60Q8IWA6 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 CDK2AP2P3-201ENST00000422476 372 ntBASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 AC027796.2-201ENST00000575326 344 ntBASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
CCDC60Q8IWA6 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC60Q8IWA6 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC60Q8IWA6 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC60Q8IWA6 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC60Q8IWA6 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC60Q8IWA6 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC60Q8IWA6 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC60Q8IWA6 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC60Q8IWA6 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC60Q8IWA6 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC60Q8IWA6 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC60Q8IWA6 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.73■□□□□ 0.59
CCDC60Q8IWA6 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC60Q8IWA6 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC60Q8IWA6 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC60Q8IWA6 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC60Q8IWA6 CBR1-202ENST00000399191 838 ntTSL 3 BASIC18.73■□□□□ 0.59
CCDC60Q8IWA6 TSEN15P1-201ENST00000423257 515 ntBASIC18.73■□□□□ 0.59
CCDC60Q8IWA6 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC18.73■□□□□ 0.59
CCDC60Q8IWA6 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms