Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP39Q53GS9 AL671277.1-201ENST00000429656 993 ntBASIC17.22■□□□□ 0.35
USP39Q53GS9 AC005237.2-201ENST00000434368 219 ntBASIC17.22■□□□□ 0.35
USP39Q53GS9 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.22■□□□□ 0.35
USP39Q53GS9 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.22■□□□□ 0.35
USP39Q53GS9 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.22■□□□□ 0.35
USP39Q53GS9 AC138761.1-201ENST00000584393 385 ntBASIC17.22■□□□□ 0.35
USP39Q53GS9 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.22■□□□□ 0.35
USP39Q53GS9 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.22■□□□□ 0.35
USP39Q53GS9 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP39Q53GS9 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP39Q53GS9 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
USP39Q53GS9 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP39Q53GS9 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.22■□□□□ 0.35
USP39Q53GS9 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
USP39Q53GS9 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP39Q53GS9 AC141586.5-201ENST00000624546 2050 ntBASIC17.22■□□□□ 0.35
USP39Q53GS9 AL355312.1-201ENST00000407115 2176 ntBASIC17.22■□□□□ 0.35
USP39Q53GS9 AC108860.2-201ENST00000562760 2183 ntBASIC17.22■□□□□ 0.35
USP39Q53GS9 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.22■□□□□ 0.35
USP39Q53GS9 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP39Q53GS9 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
USP39Q53GS9 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
USP39Q53GS9 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.21■□□□□ 0.35
USP39Q53GS9 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.21■□□□□ 0.35
USP39Q53GS9 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
USP39Q53GS9 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
USP39Q53GS9 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.21■□□□□ 0.35
USP39Q53GS9 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC17.21■□□□□ 0.35
USP39Q53GS9 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 AL627223.1-201ENST00000416693 442 ntBASIC17.21■□□□□ 0.35
USP39Q53GS9 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 SPDYE11-202ENST00000450699 704 ntBASIC17.21■□□□□ 0.35
USP39Q53GS9 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC17.21■□□□□ 0.35
USP39Q53GS9 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.21■□□□□ 0.35
USP39Q53GS9 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.21■□□□□ 0.35
USP39Q53GS9 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 SPDYE9P-201ENST00000570642 692 ntBASIC17.21■□□□□ 0.35
USP39Q53GS9 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.21■□□□□ 0.35
USP39Q53GS9 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.21■□□□□ 0.35
USP39Q53GS9 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.21■□□□□ 0.35
USP39Q53GS9 SPDYE10P-202ENST00000612005 668 ntBASIC17.21■□□□□ 0.35
USP39Q53GS9 SPDYE8P-202ENST00000612377 668 ntBASIC17.21■□□□□ 0.35
USP39Q53GS9 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.21■□□□□ 0.35
USP39Q53GS9 AC009093.7-201ENST00000623853 1223 ntBASIC17.21■□□□□ 0.35
USP39Q53GS9 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.21■□□□□ 0.35
USP39Q53GS9 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC17.21■□□□□ 0.35
USP39Q53GS9 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.35
USP39Q53GS9 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.21■□□□□ 0.35
USP39Q53GS9 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
USP39Q53GS9 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
USP39Q53GS9 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
USP39Q53GS9 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
USP39Q53GS9 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
USP39Q53GS9 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
USP39Q53GS9 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP39Q53GS9 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
USP39Q53GS9 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP39Q53GS9 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP39Q53GS9 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP39Q53GS9 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP39Q53GS9 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP39Q53GS9 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP39Q53GS9 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.2■□□□□ 0.34
USP39Q53GS9 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC17.2■□□□□ 0.34
USP39Q53GS9 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.2■□□□□ 0.34
USP39Q53GS9 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.2■□□□□ 0.34
USP39Q53GS9 SLBP-205ENST00000488267 987 ntTSL 2 BASIC17.2■□□□□ 0.34
USP39Q53GS9 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.2■□□□□ 0.34
USP39Q53GS9 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.2■□□□□ 0.34
USP39Q53GS9 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC17.2■□□□□ 0.34
USP39Q53GS9 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC17.2■□□□□ 0.34
USP39Q53GS9 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.2■□□□□ 0.34
USP39Q53GS9 AC015911.4-201ENST00000588022 1070 ntBASIC17.2■□□□□ 0.34
USP39Q53GS9 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
USP39Q53GS9 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.2■□□□□ 0.34
USP39Q53GS9 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.2■□□□□ 0.34
USP39Q53GS9 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP39Q53GS9 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
USP39Q53GS9 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
USP39Q53GS9 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
USP39Q53GS9 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms