Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 MIR3687-1-201ENST00000614492 61 ntBASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
PDLIM3Q53GG5 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 AL035633.1-201ENST00000406139 838 ntBASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 GPX1P2-201ENST00000429271 606 ntBASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 DHDH-204ENST00000523250 634 ntTSL 5 BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
PDLIM3Q53GG5 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 HLA-J-202ENST00000469281 1241 ntBASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 AL139327.4-201ENST00000612362 153 ntBASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 AGGF1P2-201ENST00000426656 2106 ntBASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC14.11□□□□□ -0.15
PDLIM3Q53GG5 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM3Q53GG5 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms