Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
RNF4P78317 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNF4P78317 BX842568.4-201ENST00000421222 227 ntBASIC15.68■□□□□ 0.1
RNF4P78317 AC004832.2-201ENST00000426397 482 ntBASIC15.68■□□□□ 0.1
RNF4P78317 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.68■□□□□ 0.1
RNF4P78317 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNF4P78317 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
RNF4P78317 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
RNF4P78317 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
RNF4P78317 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
RNF4P78317 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.68■□□□□ 0.1
RNF4P78317 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.68■□□□□ 0.1
RNF4P78317 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.68■□□□□ 0.1
RNF4P78317 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNF4P78317 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNF4P78317 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RNF4P78317 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNF4P78317 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNF4P78317 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.68■□□□□ 0.1
RNF4P78317 TUBB8P12-201ENST00000308911 1335 ntBASIC15.68■□□□□ 0.1
RNF4P78317 TUBB7P-202ENST00000428444 1305 ntBASIC15.68■□□□□ 0.1
RNF4P78317 TUBB8P7-204ENST00000567960 1332 ntBASIC15.68■□□□□ 0.1
RNF4P78317 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
RNF4P78317 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
RNF4P78317 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.67■□□□□ 0.1
RNF4P78317 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RNF4P78317 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC15.67■□□□□ 0.1
RNF4P78317 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RNF4P78317 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
RNF4P78317 AL353732.1-201ENST00000569618 1459 ntBASIC15.67■□□□□ 0.1
RNF4P78317 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RNF4P78317 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
RNF4P78317 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
RNF4P78317 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RNF4P78317 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC15.67■□□□□ 0.1
RNF4P78317 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RNF4P78317 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.67■□□□□ 0.1
RNF4P78317 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.67■□□□□ 0.1
RNF4P78317 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC15.67■□□□□ 0.1
RNF4P78317 AC092865.5-201ENST00000545435 363 ntBASIC15.67■□□□□ 0.1
RNF4P78317 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.67■□□□□ 0.1
RNF4P78317 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.67■□□□□ 0.1
RNF4P78317 PDPK2P-202ENST00000562415 1191 ntBASIC15.67■□□□□ 0.1
RNF4P78317 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC15.67■□□□□ 0.1
RNF4P78317 AC023511.2-201ENST00000618803 211 ntBASIC15.67■□□□□ 0.1
RNF4P78317 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
RNF4P78317 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RNF4P78317 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC15.67■□□□□ 0.1
RNF4P78317 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
RNF4P78317 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC15.67■□□□□ 0.1
RNF4P78317 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
RNF4P78317 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC15.67■□□□□ 0.1
RNF4P78317 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
RNF4P78317 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.67■□□□□ 0.1
RNF4P78317 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
RNF4P78317 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC15.67■□□□□ 0.1
RNF4P78317 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC15.66■□□□□ 0.1
RNF4P78317 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC15.66■□□□□ 0.1
RNF4P78317 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.66■□□□□ 0.1
RNF4P78317 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.66■□□□□ 0.1
RNF4P78317 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC15.66■□□□□ 0.1
RNF4P78317 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.66■□□□□ 0.1
RNF4P78317 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.66■□□□□ 0.1
RNF4P78317 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.66■□□□□ 0.1
RNF4P78317 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.66■□□□□ 0.1
RNF4P78317 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
RNF4P78317 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.66■□□□□ 0.1
RNF4P78317 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.66■□□□□ 0.1
RNF4P78317 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.66■□□□□ 0.1
RNF4P78317 AC091167.2-201ENST00000579581 588 ntBASIC15.66■□□□□ 0.1
RNF4P78317 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.66■□□□□ 0.1
RNF4P78317 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC15.66■□□□□ 0.1
RNF4P78317 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.66■□□□□ 0.1
RNF4P78317 MTDHP5-201ENST00000598980 586 ntBASIC15.66■□□□□ 0.1
RNF4P78317 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC15.66■□□□□ 0.1
RNF4P78317 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 AC060834.1-201ENST00000443027 2032 ntBASIC15.66■□□□□ 0.1
RNF4P78317 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC15.66■□□□□ 0.1
RNF4P78317 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
RNF4P78317 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC15.66■□□□□ 0.1
RNF4P78317 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RNF4P78317 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC15.66■□□□□ 0.1
RNF4P78317 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms