Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 HLA-F-220ENST00000434407 884 ntBASIC16.23■□□□□ 0.19
MSX2P35548 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MSX2P35548 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
MSX2P35548 GPX4-207ENST00000589115 812 ntTSL 2 BASIC16.23■□□□□ 0.19
MSX2P35548 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MSX2P35548 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC16.23■□□□□ 0.19
MSX2P35548 AC141257.4-201ENST00000634557 245 ntBASIC16.23■□□□□ 0.19
MSX2P35548 AC136944.6-201ENST00000634818 245 ntBASIC16.23■□□□□ 0.19
MSX2P35548 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSX2P35548 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSX2P35548 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSX2P35548 AL135999.2-201ENST00000622438 1686 ntBASIC16.23■□□□□ 0.19
MSX2P35548 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.23■□□□□ 0.19
MSX2P35548 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSX2P35548 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
MSX2P35548 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSX2P35548 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MSX2P35548 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSX2P35548 MST1L-201ENST00000442552 2185 ntBASIC16.23■□□□□ 0.19
MSX2P35548 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSX2P35548 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MSX2P35548 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSX2P35548 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.22■□□□□ 0.19
MSX2P35548 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
MSX2P35548 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MSX2P35548 ME2P1-201ENST00000426028 1970 ntBASIC16.22■□□□□ 0.19
MSX2P35548 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.22■□□□□ 0.19
MSX2P35548 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSX2P35548 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSX2P35548 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.22■□□□□ 0.19
MSX2P35548 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSX2P35548 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.22■□□□□ 0.19
MSX2P35548 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSX2P35548 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MSX2P35548 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
MSX2P35548 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSX2P35548 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.22■□□□□ 0.19
MSX2P35548 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.22■□□□□ 0.19
MSX2P35548 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.22■□□□□ 0.19
MSX2P35548 AP003733.1-201ENST00000491725 852 ntBASIC16.22■□□□□ 0.19
MSX2P35548 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.22■□□□□ 0.19
MSX2P35548 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC16.22■□□□□ 0.19
MSX2P35548 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
MSX2P35548 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.22■□□□□ 0.19
MSX2P35548 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC16.22■□□□□ 0.19
MSX2P35548 SNX21-213ENST00000614929 587 ntTSL 5 BASIC16.22■□□□□ 0.19
MSX2P35548 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MSX2P35548 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
MSX2P35548 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MSX2P35548 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.22■□□□□ 0.19
MSX2P35548 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
MSX2P35548 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSX2P35548 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSX2P35548 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MSX2P35548 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MSX2P35548 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSX2P35548 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSX2P35548 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.21■□□□□ 0.19
MSX2P35548 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC16.21■□□□□ 0.19
MSX2P35548 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MSX2P35548 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.21■□□□□ 0.19
MSX2P35548 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.21■□□□□ 0.19
MSX2P35548 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.21■□□□□ 0.19
MSX2P35548 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MSX2P35548 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.21■□□□□ 0.19
MSX2P35548 AC104640.1-201ENST00000562617 2109 ntBASIC16.21■□□□□ 0.19
MSX2P35548 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSX2P35548 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MSX2P35548 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
MSX2P35548 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSX2P35548 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MSX2P35548 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
MSX2P35548 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
MSX2P35548 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSX2P35548 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.21■□□□□ 0.19
MSX2P35548 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSX2P35548 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.21■□□□□ 0.19
MSX2P35548 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MSX2P35548 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
MSX2P35548 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.21■□□□□ 0.19
MSX2P35548 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.21■□□□□ 0.19
MSX2P35548 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.21■□□□□ 0.19
MSX2P35548 AC092597.1-201ENST00000487352 616 ntBASIC16.21■□□□□ 0.19
MSX2P35548 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.21■□□□□ 0.19
MSX2P35548 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.21■□□□□ 0.19
MSX2P35548 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MSX2P35548 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MSX2P35548 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSX2P35548 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.21■□□□□ 0.19
MSX2P35548 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MSX2P35548 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MSX2P35548 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSX2P35548 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.21■□□□□ 0.19
MSX2P35548 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSX2P35548 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.21■□□□□ 0.19
MSX2P35548 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSX2P35548 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
MSX2P35548 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
MSX2P35548 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MSX2P35548 AL049757.1-201ENST00000616842 1596 ntBASIC16.21■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms